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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggttaactgtatccttagaattgttggcttctcaaattaactatcaagccaattgaggctaattcttcatagattgaccatttcccttgtgccttaacagGCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAG

Basic information

species Vitis vinifera
transcript Vv13s0064g00880.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0064g00880.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G103059_T01 (Zea mays), 3'ss of exon 2
--------------------------------------------------ggttaactgtatccttagaattgttggctt-ctcaaattaactatcaagccaattgaggctaattcttcatagattgaccatttcccttgtgccttaacagGCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAG
                                                  |||    || ||   ||||| | |  ||    || || |  || |  ||  |||  |   |      | | | ||     |||    |  | ||||  ||||| ||||||||||||||||||||||||| ||| ||||||||| | ||||| |||   || |||||| | ||||||
gtaatgcaacatatctatttgattgtacttatacctttgtctgttttgatggtagcatgaatgtctagaaatatctgcgaattctaaatgcctgttgagagaat--aatttgggatatgacaaat--gtgattgtattaataccttt-cagGCCAAGACCACCAAGAAGATTGTTCTGAAGCTGCAGTGCCAGAGCTGCAAGCACTACTCACAGCACGCCATCAAG

upper sequence: Vv13s0064g00880.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G125527_T02 (Zea mays), 3'ss of exon 2
-------------------------------------------------ggttaac-tgtatccttagaattgttggctt-ctcaaattaactatcaagccaattgaggctaattcttcatagattgaccatttcccttgtgccttaacagGCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAG
                                                  | || | || ||   |  || | |  ||    || || |  || |  ||   ||| | |     | |  | | ||     |||    || | ||||  ||||| ||||||||||||||||||||||||| ||| ||||||||| | ||||| |||   || |||||| | ||||||
gtaatgcagcatatctatttgattgtacttatacctttgtctgttttgatgctagcatgaatgtctgaaaatatctgcgaattctaaatgcctgttcagt-gattaatgtgggatatg-acaaatgag--attgtatttataccttt-cagGCCAAGACCACCAAGAAGATTGTTCTGAAGCTGCAGTGCCAGAGCTGCAAGCACTACTCACAGCACGCCATCAAG

upper sequence: Vv13s0064g00880.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA08G19320.1 (Glycine max), 3'ss of exon 2
ggttaactgtatccttagaattgttggcttctcaaattaactatcaagccaattgaggctaattcttcatagattgaccatttcccttgtgccttaacagGCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAG
                     |     ||  | ||  ||| |    ||  ||||  |  |  || | |  | |   ||  |||   || |   | |  |||||||||||||||||||||||||||||||| | || |||||||||||||| || || ||||| ||| | || |||
--------------------gtaacctctcgttaacctaagtgcatagg-aattaggagtttttttcctgacaaaaacatttttatttttaattgattagGCTAAGACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAGCATGTCTCCCAACACGCTATTAAG

upper sequence: Vv13s0064g00880.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA15G05670.1 (Glycine max), 3'ss of exon 2
ggttaactgtatccttagaattgttggcttctcaaattaactatcaagccaattgaggctaattcttcatagat--tgaccatttcccttgtgccttaacagGCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAG
           | | | |  |   |   |  | |   ||| |    ||  ||||  |     || ||  | | |    |  || |   ||       || ||||||| |||||||||||||||||||||||| | || |||||||||||||| || || ||||| ||| | || |||
----------gttcgttggttaaatatttcgtta---taagtgcatagg-aattaggatctttttttttttgctgacaaaaatatatttttatttaaaatagGCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAGCATGTCTCCCAACACGCTATTAAG

upper sequence: Vv13s0064g00880.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA15G05670.2 (Glycine max), 3'ss of exon 2
ggttaactgtatccttagaattgttggcttctcaaattaactatcaagccaattgaggctaattcttcatagat--tgaccatttcccttgtgccttaacagGCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAG----
           | | | |  |   |   |  | |   ||| |    ||  ||||  |     || ||  | | |    |  || |   ||       || ||||||| |||||||||||||||||||||||| | || |||||||||||||| || || ||||| ||| | || |||    
----------gttcgttggttaaatatttcgtta---taagtgcatagg-aattaggatctttttttttttgctgacaaaaatatatttttatttaaaatagGCTAAAACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAGCATGTCTCCCAACACGCTATTAAGGTTA

upper sequence: Vv13s0064g00880.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA05G24930.1 (Glycine max), 3'ss of exon 2
ggttaactgtatccttagaattgttggcttctcaaattaactatcaagccaattgaggctaattcttcatagattgaccatttcccttgtgccttaacagGCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAG
               || |||| |   ||  |      ||  |    |||   ||    | |||  | |||  ||   | |||   |  |   | |  |||| || ||||||||||| |||||  |||||||||||||||| || ||||| || || || |||||| | ||||||
--------------gtacaattct--actgtttcccccaaacact--gccttatggtttttattgctaataattta--cttttaattaat---taattagGCGAAAACCACCAAGAAAATTGTGTTGAGGCTCCAGTGCCAAGGATGCAAGCATGTCTCGCAGCACGCTATCAAG

upper sequence: Vv13s0064g00880.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA08G08030.1 (Glycine max), 3'ss of exon 2
ggttaactgtatccttagaattgttggcttctcaaattaactatcaagccaattgaggctaattcttcatagattgaccatttcccttgtgccttaacagGCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAG
                      || | |||   |   |  |  |    ||||     ||   ||  |  | | |   | | ||  | | |   | |  |||| || ||||||||||| |||||  ||||||||||||| ||||| ||||| || || || |||||| | ||||||
------------------gtacgtcgccttactactgtttcccttcccccaaacactgccttttgatttttgttc--ctaatttacctttaattaattagGCCAAAACCACCAAGAAAATTGTGTTGAGGCTCCAGTGTCAGGGATGCAAGCATGTCTCGCAGCACGCTATCAAG

upper sequence: Vv13s0064g00880.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT3G23390.1 (Arabidopsis thaliana), 3'ss of exon 2
---------------------------------------------------------------------ggttaactgtatccttagaattgttggcttctcaaattaactatcaagccaattgaggct--aat--tct---tcatagattgac-catttcccttgtgcctt---aacagGCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAG
                                                                     | || |  | | | ||   || || |  || |  || | |      ||  ||  ||   |  |||  |||   |  | || |||   |  ||   ||   |||   |||||||||||||||| |||||||||||| ||||||| ||||| ||  | ||||| ||| | || ||||  || ||||||
gtaacattgattatcatgcattgattgttttttcagtttgaattaggtctagttagttgaaatgaggtagttttaaggaaccattt--atagtagaattttggaagtgagctgtgaggaaacagacattccaatagtctcagttttggactgagatacatcttgtgaatcttgttaacagGCTAAGACCACGAAGAAGATTGTTTTGAGGCTTCAGTGTCAAAGCTGCAAGCACTTTTCGCAGCGTCCTATCAAG

upper sequence: Vv13s0064g00880.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT4G14320.1 (Arabidopsis thaliana), 3'ss of exon 2
------------------------------------ggttaactgtatccttagaattgttggcttctcaaattaactat------caagccaattgaggctaattcttca--taga--ttgaccatttcccttgtgcctt---aacagGCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAG
                                     ||   || | |    |  | | | || ||    |||| ||| |       | | |   |  |  | |||  | |  | ||  |||  ||||     | |  |||   ||||||||||||| || ||||||||||| |||||||| || |||||  | ||||| ||  | || || | ||| || |||
gtatactcgcttttccttgtcttgatctctaattactgtcttctatgtgagaaccaatttaggatttcagaattgactctgtgaaatatgtcttataggaatgatttgttaattggaccttgctcattatttgtctttctttggaacagGCTAAGACAACTAAGAAGATTGTGCTGAGGCTTCAATGCCAAAGCTGCAAGCATTTCTCGCAACGCCCGATTAAG

upper sequence: Vv13s0064g00880.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: PP1S22_326V6.2 (Physcomitrella patens), 3'ss of exon 3
ggttaactgtatccttagaattgttggcttctcaaattaactatcaagccaattgaggctaattcttcatagattgaccatttcccttgtgccttaacagGCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAG
                                     | |   ||    | |||   | |   | ||| |   ||   | |||   || | |||   ||||||||||| |||||||||||||| |||||| | |||||||||| |||||| |||||  | || || || ||||||
-------------------------------------tcatcttctctgcgatttttgttg--ttttcttttcttcttcttttttattttacct---caggctaagactaccaagaagattgtactgaggttacagtgccagGCTTGCAAGCACGTGACACAACATCCTATCAAG

upper sequence: Vv13s0064g00880.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: PP1S22_326V6.1 (Physcomitrella patens), 3'ss of exon 3
ggttaactgtatccttagaattgttggcttctcaaattaactatcaagccaattgaggctaattcttcatagattgaccat----ttcccttgtgccttaac--agGCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAG
        ||||  | |    | |  | |  | |||   |  |  ||| ||  |         | ||  | | ||     |    |||  || |   ||| |  |||||||||| |||||||||||||| |||||| | |||||||||| |||||| |||||  | || || || ||||||
------tcgtattgtcaatgatttctggtagtaaaaaacaggactaagtcatcttctctgcgatttttgttgttttcttttcttcttcttttttattttacctcagGCTAAGACTACCAAGAAGATTGTACTGAGGTTACAGTGCCAGGCTTGCAAGCACGTGACACAACATCCTATCAAG

upper sequence: Vv13s0064g00880.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: PP1S2_415V6.1 (Physcomitrella patens), 3'ss of exon 3
ggttaactgtatccttagaattgttggcttctcaaattaactatcaa----gcca-attgaggctaattcttcatagat-----tgaccatttcccttgtgccttaa---cagGCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAG
             | | || || | ||  | ||||||        ||    |  | |||  | |||    ||| |  ||     |  | ||||   ||||     ||   ||||||||||| |||||||||||||| |||||| | ||||| |||| |||||| |||||  | || || || || |||
------------tcctggagtt-tcggggtttcaaatgtggggcaaatgttgttatatttggactatgctttcgtgtatctttttaccgatttatgttgtcttggaatctcagGCTAAGACTACCAAGAAGATTGTGCTGAGGTTGCAGTGTCAGGCTTGCAAGCACGTGACACAACATCCCATTAAG

upper sequence: Vv13s0064g00880.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: PP1S6_198V6.1 (Physcomitrella patens), 3'ss of exon 3
-------------------------------------------------------------------ggttaactgtatccttagaattgttggcttctcaaattaactatcaagccaattgaggctaattcttcatagattgaccatttcccttgtgccttaacagGCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAG
                                                                    || |  |||    | |   |  |  |  ||   |||    ||||       |  |   |     |||      ||  ||| |     ||    |  |||||||||||||| ||||||||||| || ||| | |||||||||| |||||| || ||  | |||||||| ||||||
gttagctaaacccagtcgtgtatttcgaggttttatgtcactattctttagagtcatctggcttgtacgtgatttgttgaatcatgttcatatgtctcgtcaatctcatatctcatgtgtatattatggcgtttcgagctatgctcatgtgaaccgtattattgcagGCTAAGACCACAAAGAAGATTGTGCTCAGGTTGCAGTGCCAGGCTTGCAAGCATGTGACACAGCACCCTATCAAG

upper sequence: Vv13s0064g00880.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: EFJ05955 (Selaginella moellendorffii), 3'ss of exon 3
ggttaactgtatccttagaattgttggcttctcaaattaactatcaagccaattgaggctaattcttcatagattgaccatttcccttgtgccttaacagGCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAG
              |  |||   || |||  || || |     || |  | ||  | |||   ||      ||||||     |              ||||| ||||||||||||||||| || ||  ||||||||||||||   ||||| | ||| || ||||||||  | |||
-------------gtaggaagctttcgctattccaaat-----tccaatcgatctaagctctctccctgc-gattgaatgaat-------------gcagGCCAAGACCACCAAGAAGATCGTGCTCCGGCTCCAGTGCCAGACGTGCAAGCGCGTGTCGCAGCACCCTCTAAAG

upper sequence: Vv13s0064g00880.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: EFJ07113 (Selaginella moellendorffii), 3'ss of exon 3
ggttaactgtatccttagaattgttggcttctcaaattaactatcaagccaattgaggctaattcttcatagattgaccatttcccttgtgccttaacagGCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAG
              |  |||   || ||| |            || |  | ||  | |||   ||    | ||||||     |              ||||| ||||||||||||||||| || ||  ||||||||||||||   ||||| | ||| || ||||||||  | |||
-------------gtaggaaactttcgctgcctg---ctgtgctccaatcgatctaagctctctccctgt-gattgaatgaat-------------gcagGCCAAGACCACCAAGAAGATCGTGCTCCGGCTCCAGTGCCAGACGTGCAAGCGCGTGTCGCAGCACCCTCTAAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30135051|gb|CB920389.1|CB920389
EST:     GCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAG                         GCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAA
genomic: GCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAGgtaaacaccc ... gccttaacagGCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAA
EST: gi|71890851|gb|DT039906.1|DT039906
EST:     GCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAG                         GCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAA
genomic: GCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAGgtaaacaccc ... gccttaacagGCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAA
EST: gi|110402492|gb|EC960255.1|EC960255
EST:     GCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAG                         GCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAA
genomic: GCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAGgtaaacaccc ... gccttaacagGCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAA
EST: gi|110394697|gb|EC959942.1|EC959942
EST:     GCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAG                         GCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAA
genomic: GCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAGgtaaacaccc ... gccttaacagGCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAA
EST: gi|110700010|gb|EE077558.1|EE077558
EST:     GCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAG                         GCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAA
genomic: GCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAGgtaaacaccc ... gccttaacagGCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAA
EST: gi|71868045|gb|DT017100.1|DT017100
EST:     GCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAG                         GCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAA
genomic: GCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAGgtaaacaccc ... gccttaacagGCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAA
EST: gi|22007688|gb|BQ792722.1|BQ792722
EST:     GCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTTTTCCACAAAAAG                         GTTAAGACCCCCAAGAAGATTGTTTTGAGGCTCCAGTGCCAGGGTTGCAAA
genomic: GCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAGgtaaacaccc ... gccttaacagGCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAA
EST: gi|110420674|gb|EC986950.1|EC986950
EST:     GCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAG                         GCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAA
genomic: GCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAGgtaaacaccc ... gccttaacagGCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAA
EST: gi|110361090|gb|EC924543.1|EC924543
EST:     GCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAG                         GCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAA
genomic: GCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAGgtaaacaccc ... gccttaacagGCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAA
EST: gi|110361862|gb|EC925364.1|EC925364
EST:     GCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAG                         GCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAA
genomic: GCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAGgtaaacaccc ... gccttaacagGCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAA
EST: gi|110400917|gb|EC967504.1|EC967504
EST:     GCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAG                         GCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAA
genomic: GCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAGgtaaacaccc ... gccttaacagGCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAA
EST: gi|30137977|gb|CB923315.1|CB923315
EST:     GCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAG                         GCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAA
genomic: GCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAGgtaaacaccc ... gccttaacagGCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAA
EST: gi|352794709|gb|FQ475207.1|FQ475207
EST:     GCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAG                         GCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAA
genomic: GCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAGgtaaacaccc ... gccttaacagGCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAA
EST: gi|71871501|gb|DT020556.1|DT020556
EST:     GCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAG                         GCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAA
genomic: GCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAGgtaaacaccc ... gccttaacagGCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAA
EST: gi|110695514|gb|EE073619.1|EE073619
EST:     GCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAG                         GCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAA
genomic: GCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAGgtaaacaccc ... gccttaacagGCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAA
EST: gi|110415815|gb|EC981750.1|EC981750
EST:     GCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAG                         GCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAA
genomic: GCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAGgtaaacaccc ... gccttaacagGCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAA
EST: gi|110371374|gb|EC935347.1|EC935347
EST:     GCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAG                         GCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAA
genomic: GCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAGgtaaacaccc ... gccttaacagGCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAA
EST: gi|110717588|gb|EE093586.1|EE093586
EST:     GCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAG                         GCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAA
genomic: GCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAGgtaaacaccc ... gccttaacagGCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAA
EST: gi|110426407|gb|EC992814.1|EC992814
EST:     GCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAG                         GCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAA
genomic: GCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAGgtaaacaccc ... gccttaacagGCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAA
EST: gi|110706762|gb|EE082572.1|EE082572
EST:     GCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAG                         GCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAA
genomic: GCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAGgtaaacaccc ... gccttaacagGCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAA
EST: gi|110411382|gb|EC977093.1|EC977093
EST:     GCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAG                         GCTAAGACCACCAAGAAGATTGTTTTGAGGCTCCAGTGCCAGGGTTGCAAA
genomic: GCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAGgtaaacaccc ... gccttaacagGCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAA
EST: gi|34547028|gb|CF515260.1|CF515260
EST:     GCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAG                         GCTAAGACCCCCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAA
genomic: GCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAGgtaaacaccc ... gccttaacagGCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAA
EST: gi|110715681|gb|EE094010.1|EE094010
EST:     GCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAG                         GCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAA
genomic: GCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAGgtaaacaccc ... gccttaacagGCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAA
EST: gi|110715889|gb|EE094458.1|EE094458
EST:     GCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAG                         GCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAA
genomic: GCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAGgtaaacaccc ... gccttaacagGCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAA
EST: gi|110385804|gb|EC950360.1|EC950360
EST:     GCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAG                         GCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAA
genomic: GCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAGgtaaacaccc ... gccttaacagGCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAA
EST: gi|110733241|gb|EE109259.1|EE109259
EST:     GCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAG                         GCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAA
genomic: GCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAGgtaaacaccc ... gccttaacagGCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAA
EST: gi|110404211|gb|EC968920.1|EC968920
EST:     GCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAG                         GCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAA
genomic: GCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAGgtaaacaccc ... gccttaacagGCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAA
EST: gi|110401167|gb|EC967767.1|EC967767
EST:     GCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAG                         GCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAA
genomic: GCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAGgtaaacaccc ... gccttaacagGCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAA
EST: gi|110688700|gb|EE067548.1|EE067548
EST:     GCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAG                         GCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAA
genomic: GCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAGgtaaacaccc ... gccttaacagGCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAA
EST: gi|110730484|gb|EE107616.1|EE107616
EST:     GCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAG                         GCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAA
genomic: GCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAGgtaaacaccc ... gccttaacagGCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAA
EST: gi|110702010|gb|EE080238.1|EE080238
EST:     GCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAG                         GCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAA
genomic: GCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAGgtaaacaccc ... gccttaacagGCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAA
EST: gi|110407406|gb|EC973006.1|EC973006
EST:     GCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAG                         GCTAAGACCCCCAAGAAGATTGTTTTGAGGCTCCAGTGCCAGGGTTGCAAA
genomic: GCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAGgtaaacaccc ... gccttaacagGCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAA
EST: gi|34416086|gb|CF414840.1|CF414840
EST:     GCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAG                         GCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAA
genomic: GCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAGgtaaacaccc ... gccttaacagGCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAA
EST: gi|110694552|gb|EE071756.1|EE071756
EST:     GCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAG                         GCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAA
genomic: GCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAGgtaaacaccc ... gccttaacagGCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAA
EST: gi|110691265|gb|EE069167.1|EE069167
EST:     GCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAG                         GCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAA
genomic: GCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAGgtaaacaccc ... gccttaacagGCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAA
EST: gi|110399167|gb|EC965660.1|EC965660
EST:     GCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAG                         GCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAA
genomic: GCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAGgtaaacaccc ... gccttaacagGCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAA
EST: gi|110697783|gb|EE075161.1|EE075161
EST:     GCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAG                         GCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAA
genomic: GCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAGgtaaacaccc ... gccttaacagGCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAA
EST: gi|110691638|gb|EE069972.1|EE069972
EST:     GCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAG                         GCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAA
genomic: GCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAGgtaaacaccc ... gccttaacagGCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAA
EST: gi|51051605|gb|CO819140.1|CO819140
EST:     GCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAG                         GCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAA
genomic: GCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAGgtaaacaccc ... gccttaacagGCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAA
EST: gi|110399415|gb|EC965920.1|EC965920
EST:     GCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAG                         GCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAA
genomic: GCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAGgtaaacaccc ... gccttaacagGCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAA
EST: gi|22015037|gb|BQ800071.1|BQ800071
EST:     GCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAG                         GCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAA
genomic: GCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAGgtaaacaccc ... gccttaacagGCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAA
EST: gi|110705546|gb|EE082520.1|EE082520
EST:     GCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAG                         GCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAA
genomic: GCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAGgtaaacaccc ... gccttaacagGCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAA
EST: gi|352795122|gb|FQ477232.1|FQ477232
EST:     GCAAACAGTCTGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAG                         GCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAA
genomic: GCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAGgtaaacaccc ... gccttaacagGCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAA
EST: gi|110373932|gb|EC938939.1|EC938939
EST:     GCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAG                         GCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAA
genomic: GCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAGgtaaacaccc ... gccttaacagGCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAA
EST: gi|110365043|gb|EC928753.1|EC928753
EST:     GCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAG                         GCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAA
genomic: GCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAGgtaaacaccc ... gccttaacagGCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAA
EST: gi|110702254|gb|EE080754.1|EE080754
EST:     GCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAG                         GCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAA
genomic: GCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAGgtaaacaccc ... gccttaacagGCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAA
EST: gi|110730485|gb|EE107617.1|EE107617
EST:     GCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAG                         GCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAA
genomic: GCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAGgtaaacaccc ... gccttaacagGCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagccaattgaggctaattcttcatagattgaccatttcccttgtgccttaacagGCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAG
                          gattgac  putative branch site (score: 3)
                                   tttcccttgtgcctt  putative PPT
              taattctt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ggttaactgtatccttagaattgttggcttctcaaattaactatcaagccaattgaggctaattcttcatagattgaccatttcccttgtgccttaacagGCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAG

- - - -tgtatcc
- - - - - - - - - - -tgttggc
- - - - - - - - - - - - - - - - -aaattaa
- - - - - - - - - - - - - - - - - - - - - - -aagccaa