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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgttatacatttttttcatattaagagctacagatcttttctcttcttgcatttttggtgtgtttggggtttgtgattatcggattaagttttgggaaatacttgatgatggcagGAAAATTGATTCTGATTTCGAACAATTGTCCGCCGCTCCGAAAATCGGAGATCGAGTACTATGCGATGCTTTCCAAAGTCAGCGTGCACCATTTTCATGG

Basic information

species Vitis vinifera
transcript Vv13s0064g00850.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0064g00850.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: EFJ13021 (Selaginella moellendorffii), 3'ss of exon 1
gtttgttatacatttttttcatattaagagctacagatcttttctcttcttgcatttttggtgtgtttggggtttgtgattatcggattaagttttgggaaatacttgatgatggcagGAAAATTGATTCTGATTTCGAACAATTGTCCGCCGCTCCGAAAATCGGAGATCGAGTACTATGCGATGCTTTCCAAAGTCAGCGTGCACCATTTTCATGG
                                                         |  |||   |     |||||   | | |   |   |   | |    | | | ||   ||||| ||  |  | || || || |||||||| ||||| || || |||||||||||||||||||| |||||||| |||||    | ||| ||||| |     ||
--------------------------------------------------------gtgtgtgaaatccctctttgtttctcttgcgattgatccagtggcgcattgggtgc--gcagGGAAGCTTGTGCTCATCTCCAACAATTGCCCGCCCCTTCGCAAATCGGAGATCGAGTACTACGCGATGCTCTCCAAGACGAACGTCCACCACTACAGCGG

upper sequence: Vv13s0064g00850.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: EFJ14031 (Selaginella moellendorffii), 3'ss of exon 1
gtttgttatacatttttttcatattaagagctacagatcttttctcttcttgcatttttggtgtgtttggggtttgtgattatcggattaagttttgggaaatacttgatgatggcagGAAAATTGATTCTGATTTCGAACAATTGTCCGCCGCTCCGAAAATCGGAGATCGAGTACTATGCGATGCTTTCCAAAGTCAGCGTGCACCATTTTCATGG
                                                            |||   |     |||||   | | |   |   |     |    | | | ||   ||||| ||  |  | || || || |||||||| ||||| || || |||||||||||||||||||| |||||||| |||||    | ||| ||||| |     ||
----------------------------------------------------------gtgtgaaatccctctttgtttctcttgcgattgatccattggcgcattgggtgc--gcagGGAAGCTTGTGCTCATCTCCAACAATTGCCCGCCCCTTCGCAAATCGGAGATCGAGTACTACGCGATGCTCTCCAAGACGAACGTCCACCACTACAGCGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|83276983|gb|DV940991.1|DV940991
EST:     GTACACGCTCGGTTACAAGACCGTGCTCAAGAGCCTCAGAAGCTCCAAGG                         GAAAATTGATTCTGATTTCGAACAATTGTCCGCCGCTCCGAAAATCGGAGA
genomic: GTACACGCTCGGCTACAAGACCGTGCTCAAGAGCCTCAGAAGCTCCAAGGgtttgttata ... atgatggcagGAAAATTGATTCTGATTTCGAACAATTGTCCGCCGCTCCGAAAATCGGAGA
EST: gi|30127653|gb|CB912992.1|CB912992
EST:     AGCCTCAGAAGCTCCAAGG                         GAAAATTGATTCTGATTTCGAACAATTGTCCGCCGCTCCGAAAATCGGAGA
genomic: AGCCTCAGAAGCTCCAAGGgtttgttata ... atgatggcagGAAAATTGATTCTGATTTCGAACAATTGTCCGCCGCTCCGAAAATCGGAGA
EST: gi|77588180|gb|DV223301.1|DV223301
EST:     GTACACGCTCGGCTACAAGACCGTGCTCAAGAGCCTCAGAAGCTCCAAGG                         GAAAATTGATTCTGATTTCGAACAATTGTCCGCCGCTCCGAAAATCGGAGA
genomic: GTACACGCTCGGCTACAAGACCGTGCTCAAGAGCCTCAGAAGCTCCAAGGgtttgttata ... atgatggcagGAAAATTGATTCTGATTTCGAACAATTGTCCGCCGCTCCGAAAATCGGAGA
EST: gi|71872071|gb|DT021126.1|DT021126
EST:     GTACACGCTCGGCTACAAGACCGTGCTCAAGAGCCTCAGAAGCTCCAAGG                         GAAAATTGATTCTGATTTCGAACAATTGTCCGCCGCTCCGAAAATCGGAGA
genomic: GTACACGCTCGGCTACAAGACCGTGCTCAAGAGCCTCAGAAGCTCCAAGGgtttgttata ... atgatggcagGAAAATTGATTCTGATTTCGAACAATTGTCCGCCGCTCCGAAAATCGGAGA
EST: gi|110376398|gb|EC941462.1|EC941462
EST:     GTACACGCTCGGCTACAAGACCGTGCTCAAGAGCCTCAGAAGCTCCAAGG                         GAAAATTGATTCTGATTTCGAACAATTGTCCGCCGCTCCGAAAATCGGAGA
genomic: GTACACGCTCGGCTACAAGACCGTGCTCAAGAGCCTCAGAAGCTCCAAGGgtttgttata ... atgatggcagGAAAATTGATTCTGATTTCGAACAATTGTCCGCCGCTCCGAAAATCGGAGA
EST: gi|37187884|gb|CF607235.1|CF607235
EST:     GTACACGCTCGGCTACAAGACCGTGCTCAAGAGCCTCAGAAGCTCCAAGG                         GAAAATTGATTCTGATTTCGAACAATTGTCCGCCGCTCCGAAAATCGGAGA
genomic: GTACACGCTCGGCTACAAGACCGTGCTCAAGAGCCTCAGAAGCTCCAAGGgtttgttata ... atgatggcagGAAAATTGATTCTGATTTCGAACAATTGTCCGCCGCTCCGAAAATCGGAGA
EST: gi|71867496|gb|DT016551.1|DT016551
EST:     GTACACGCTCGGCTACAAGACCGTGCTCAAGAGCCTCAGAAGCTCCAAGG                         GAAAATTGATTCTGATTTCGAACAATTGTCCGCCGCTCCGAAAATCGGAGA
genomic: GTACACGCTCGGCTACAAGACCGTGCTCAAGAGCCTCAGAAGCTCCAAGGgtttgttata ... atgatggcagGAAAATTGATTCTGATTTCGAACAATTGTCCGCCGCTCCGAAAATCGGAGA
EST: gi|71873230|gb|DT022285.1|DT022285
EST:     GTACACGCTCGGCTACAAGACCGTGCTCAAGAGCCTCAGAAGCTCCAAGG                         GAAAATTGATTCTGATTTCGAACAATTGTCCGCCGCTCCGAAAATCGGAGA
genomic: GTACACGCTCGGCTACAAGACCGTGCTCAAGAGCCTCAGAAGCTCCAAGGgtttgttata ... atgatggcagGAAAATTGATTCTGATTTCGAACAATTGTCCGCCGCTCCGAAAATCGGAGA
EST: gi|110733216|gb|EE109213.1|EE109213
EST:     GTACACGCTCGGCTACAAGACGGTGCTCAAGAGCCTCAGAAGCTCCAAGG                         GAAAATTGATTCTGATTTCGAACAATTGTCCGCCGCTCCGAAAATCGGAGA
genomic: GTACACGCTCGGCTACAAGACCGTGCTCAAGAGCCTCAGAAGCTCCAAGGgtttgttata ... atgatggcagGAAAATTGATTCTGATTTCGAACAATTGTCCGCCGCTCCGAAAATCGGAGA
EST: gi|87585575|gb|DY474236.1|DY474236
EST:     GTACACGCTCGGCTACAAGACCGTGCTCAAGAGCCTCAGAAGCTCCAAGG                         GAAAATTGATTCTGATTTCGAACAATTGTCCGCCGCTCCGAAAATCGGAGA
genomic: GTACACGCTCGGCTACAAGACCGTGCTCAAGAGCCTCAGAAGCTCCAAGGgtttgttata ... atgatggcagGAAAATTGATTCTGATTTCGAACAATTGTCCGCCGCTCCGAAAATCGGAGA
EST: gi|110366148|gb|EC929857.1|EC929857
EST:     GTACACGCTCGGCTACAAGACCGTGCTCAAGAGCCTCAGAAGCTCCAAGG                         GAAAATTGATTCTGATTTCGAACAATTGTCCGCCGCTCCGAAAATCGGAGA
genomic: GTACACGCTCGGCTACAAGACCGTGCTCAAGAGCCTCAGAAGCTCCAAGGgtttgttata ... atgatggcagGAAAATTGATTCTGATTTCGAACAATTGTCCGCCGCTCCGAAAATCGGAGA
EST: gi|77579663|gb|DV218684.1|DV218684
EST:     GTACACGCTCGGCTACAAGACCGTGCTCAAGAGCCTCAGAAGCTCCAAGG                         GAAAATTGATTCTGATTTCGAACAATTGTCCGCCGCTCCGAAAATCGGAGA
genomic: GTACACGCTCGGCTACAAGACCGTGCTCAAGAGCCTCAGAAGCTCCAAGGgtttgttata ... atgatggcagGAAAATTGATTCTGATTTCGAACAATTGTCCGCCGCTCCGAAAATCGGAGA
EST: gi|77577312|gb|DV217370.1|DV217370
EST:     GTACACGCTCGGCTACAAGACCGTGCTCAAGAGCCTCAGAAGCTCCAAGG                         GAAAATTGATTCTGATTTCGAACAATTGTCCGCCGCTCCGAAAATCGGAGA
genomic: GTACACGCTCGGCTACAAGACCGTGCTCAAGAGCCTCAGAAGCTCCAAGGgtttgttata ... atgatggcagGAAAATTGATTCTGATTTCGAACAATTGTCCGCCGCTCCGAAAATCGGAGA
EST: gi|110378405|gb|EC943536.1|EC943536
EST:     GTACACGCTCGGCTACAAGACCGTGCTCAAGAGCCTCAGAAGCTCCAAGG                         GAAAATTGATTCTGATTTCGAACAATTGTCCGCCGCTCCGAAAATCGGAGA
genomic: GTACACGCTCGGCTACAAGACCGTGCTCAAGAGCCTCAGAAGCTCCAAGGgtttgttata ... atgatggcagGAAAATTGATTCTGATTTCGAACAATTGTCCGCCGCTCCGAAAATCGGAGA
EST: gi|71866692|gb|DT015747.1|DT015747
EST:     GTACACGCTCGGCTACAAGACCGTGCTCAAGAGCCTCAGAAGCTCCAAGG                         GAAAATTGATTCTGATTTCGAACAATTGTCCGCCGCTCCGAAAATCGGAGA
genomic: GTACACGCTCGGCTACAAGACCGTGCTCAAGAGCCTCAGAAGCTCCAAGGgtttgttata ... atgatggcagGAAAATTGATTCTGATTTCGAACAATTGTCCGCCGCTCCGAAAATCGGAGA
EST: gi|30137151|gb|CB922489.1|CB922489
EST:     GTACACGCTCGGCTACAAGACCGTGCTCAAGAGCCTCAGAAGCTCCAAGG                         GAAAATTGATTCTGATTTCGAACAATTGTCCGCCGCTCCGAAAATCGGAGA
genomic: GTACACGCTCGGCTACAAGACCGTGCTCAAGAGCCTCAGAAGCTCCAAGGgtttgttata ... atgatggcagGAAAATTGATTCTGATTTCGAACAATTGTCCGCCGCTCCGAAAATCGGAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtttggggtttgtgattatcggattaagttttgggaaatacttgatgatggcagGAAAATTGATTCTGATTTCGAACAATTGTCCGCCGCTCCGAAAATCGGAGATCGAGTACTATGCGATGCTTTCCAAAGTCAGCGTGCACCATTTTCATGG
                                        acttgat  putative branch site (score: 5)
                       attaagtttt  TA-rich tract