1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gcaagttcaatatttattttttgtagaatgattctatacttaatttgattttgtaagaggctacagagagtttgatgtgtagcaatagaaccttttatgtcactatttaaattcagcaaaactaatgggtgtttgtttagGTTGGTTCGTCTGTCAATCAAGATGGTTTTGAGGCACAGGAACTTGTGCCGGGAATTGGTGGCATCACCATAAATGATGAATTCTCTAGTGAGGTTGTTG
species | Vitis vinifera |
transcript | Vv13s0064g00450.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AATCTGCAGTGTATTAGATGGACAATGATAATGACTTCACCTTTTGTCAG GTTGGTTCGTCTGTCAATCAAGATGGTTTTGAGGCACAGGAACTTGTGCCGEST: gi|71855326|gb|DT004381.1|DT004381
genomic: AATCTGCAGTGTATTAGATGGACAATGATAATGACTTCACCTTTTGTCAGgcaagttcaa ... gtttgtttagGTTGGTTCGTCTGTCAATCAAGATGGTTTTGAGGCACAGGAACTTGTGCCG
EST: AATCTGCAGTGTATTAGATGGACAATGATAATGACTTCACCTTTTGTCAG GTTGGTTCGTCTGTCAATCAAGATGGTTTTGAGGCACAGGAACTTGTGCCGEST: gi|161714616|gb|FC064213.1|FC064213
genomic: AATCTGCAGTGTATTAGATGGACAATGATAATGACTTCACCTTTTGTCAGgcaagttcaa ... gtttgtttagGTTGGTTCGTCTGTCAATCAAGATGGTTTTGAGGCACAGGAACTTGTGCCG
EST: AATCTGCAGTGTATTAGATGGACAATGATAATGACTTCACCTTTTGTCAG GTTGGTTCGTCTGTCAATCAAGATGGTTTTGAGGCACAGGAACTTGTGCCG
genomic: AATCTGCAGTGTATTAGATGGACAATGATAATGACTTCACCTTTTGTCAGgcaagttcaa ... gtttgtttagGTTGGTTCGTCTGTCAATCAAGATGGTTTTGAGGCACAGGAACTTGTGCCG
tagaaccttttatgtcactatttaaattcagcaaaactaatgggtgtttgtttagGTTGGTTCGTCTGTCAATCAAGATGGTTTTGAGGCACAGGAACTTGTGCCGGGAATTGGTGGCATCACCATAAATGATGAATTCTCTAGTGAGGTTGTTG
aactaat putative branch site (score: 2)
tttgttt putative PPT
ttttatgtcactattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaagttcaatatttattttttgtagaatgattctatacttaatttgattttgtaagaggctacagagagtttgatgtgtagcaatagaaccttttatgtcactatttaaattcagcaaaactaatgggtgtttgtttagGTTGGTTCGTCTGTCAATCAAGATGGTTTTGAGGCACAGGAACTTGTGCCGGGAATTGGTGGCATCACCATAAATGATGAATTCTCTAGTGAGGTTGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG