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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcccctcccatctgtttgccgtttctaaactccgataatgctctgattctccctatctcttctctttctttacattcctttctctctttacaccaagcagATAAGCTTTATGGAGTCGCCCGAATCTGCCTACGTCTCATCGCCCGAGGTCCCGCCCAAGCGATCCTCGCCTCCCAGATCCCCCACTTCAG

Basic information

species Vitis vinifera
transcript Vv13s0019g05360.t01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351046365|gb|FQ452981.1|FQ452981
EST:     TCAGGAAGCACATAGCGATAGATAAAAAGAGAGCACGGCATCTGCACCAG                         ATAAGCTTTATGGAGTCGCCCGAATCTGCCTACGTCTCATCGCCCGAGGTC
genomic: TCAGGAAGCACATAGCGATAGATAAAAAGAGAGCACGGCATCTGCACCAGgtcagcacat ... caccaagcagATAAGCTTTATGGAGTCGCCCGAATCTGCCTACGTCTCATCGCCCGAGGTC
EST: gi|352785971|gb|FQ481765.1|FQ481765
EST:     TCAGGAAGCACATAGCGATAGATAAAAAGAGAGCACGGCATCTGCACCAG                         ATAAGCTTTATGGAGTCGCCCGAATCTGCCTACGTCTCATCGCCCGAGGTC
genomic: TCAGGAAGCACATAGCGATAGATAAAAAGAGAGCACGGCATCTGCACCAGgtcagcacat ... caccaagcagATAAGCTTTATGGAGTCGCCCGAATCTGCCTACGTCTCATCGCCCGAGGTC
EST: gi|351057061|gb|FQ448578.1|FQ448578
EST:     TCAGGAAGCACATAGCGATAGATAAAAAGAGAGCACGGCATCTGCACCAG                         ATAAGCTTTATGGAGTCGCCCGAATCTGCCTACGTCTCATCGCCCGAGGTC
genomic: TCAGGAAGCACATAGCGATAGATAAAAAGAGAGCACGGCATCTGCACCAGgtcagcacat ... caccaagcagATAAGCTTTATGGAGTCGCCCGAATCTGCCTACGTCTCATCGCCCGAGGTC
EST: gi|349823219|gb|FQ400198.1|FQ400198
EST:     TCAGGAAGCACATAGCGATAGATAAAAAGAGAGCACGGCATCTGCACCAG                         ATAAGCTTTATGGAGTCGCCCGAATCTGCCTACGTCTCATCGCCCGAGGTC
genomic: TCAGGAAGCACATAGCGATAGATAAAAAGAGAGCACGGCATCTGCACCAGgtcagcacat ... caccaagcagATAAGCTTTATGGAGTCGCCCGAATCTGCCTACGTCTCATCGCCCGAGGTC
EST: gi|351055155|gb|FQ440494.1|FQ440494
EST:     TCAGGAAGCACATAGCGATAGATAAAAAGAGAGCACGGCATCTGCACCAG                         ATAAGCTTTATGGAGTCGCCCGAATCTGCCTACGTCTCATCGCCCGAGGTC
genomic: TCAGGAAGCACATAGCGATAGATAAAAAGAGAGCACGGCATCTGCACCAGgtcagcacat ... caccaagcagATAAGCTTTATGGAGTCGCCCGAATCTGCCTACGTCTCATCGCCCGAGGTC
EST: gi|351043628|gb|FQ451559.1|FQ451559
EST:     TCAGGAAGCACATAGCGATAGATAAAAAGAGAGCACGGCATCTGCACCAG                         ATAAGCTTTATGGAGTCGCCCGAATCTGCCTACGTCTCATCGCCCGAGGTC
genomic: TCAGGAAGCACATAGCGATAGATAAAAAGAGAGCACGGCATCTGCACCAGgtcagcacat ... caccaagcagATAAGCTTTATGGAGTCGCCCGAATCTGCCTACGTCTCATCGCCCGAGGTC
EST: gi|351037387|gb|FQ460586.1|FQ460586
EST:     TCAGGAAGCACATAGCGATAGATAAAAAGAGAGCACGGCATCTGCACCAG                         ATAAGCTTTATGGAGTCGCCCGAATCTGCCTACGTCTCATCGCCCGAGGTC
genomic: TCAGGAAGCACATAGCGATAGATAAAAAGAGAGCACGGCATCTGCACCAGgtcagcacat ... caccaagcagATAAGCTTTATGGAGTCGCCCGAATCTGCCTACGTCTCATCGCCCGAGGTC
EST: gi|349820040|gb|FQ404762.1|FQ404762
EST:     TCAGGAAGCACATAGCGATAGATAAAAAGAGAGCACGGCATCTGCACCAG                         ATAAGCTTTATGGAGTCGCCCGAATCTGCCTACGTCTCATCGCCCGAGGTC
genomic: TCAGGAAGCACATAGCGATAGATAAAAAGAGAGCACGGCATCTGCACCAGgtcagcacat ... caccaagcagATAAGCTTTATGGAGTCGCCCGAATCTGCCTACGTCTCATCGCCCGAGGTC
EST: gi|349827032|gb|FQ421305.1|FQ421305
EST:     TCAGGAAGCACATAGCGATAGATAAAAAGAGAGCACGGCATCTGCACCAG                         ATAAGCTTTATGGAGTCGCCCGAATCTGCCTACGTCTCATCGCCCGAGGTC
genomic: TCAGGAAGCACATAGCGATAGATAAAAAGAGAGCACGGCATCTGCACCAGgtcagcacat ... caccaagcagATAAGCTTTATGGAGTCGCCCGAATCTGCCTACGTCTCATCGCCCGAGGTC
EST: gi|351052907|gb|FQ453894.1|FQ453894
EST:     TCAGGAAGCACATAGCGATAGATAAAAAGAGAGCACGGCATCTGCACCAG                         ATAAGCTTTATGGAGTCGCCCGAATCTGCCTACGTCTCATCGCCCGAGGTC
genomic: TCAGGAAGCACATAGCGATAGATAAAAAGAGAGCACGGCATCTGCACCAGgtcagcacat ... caccaagcagATAAGCTTTATGGAGTCGCCCGAATCTGCCTACGTCTCATCGCCCGAGGTC
EST: gi|351047124|gb|FQ454734.1|FQ454734
EST:     TCAGGAAGCACATAGCGATAGATAAAAAGAGAGCACGGCATCTGCACCAG                         ATAAGCTTTATGGAGTCGCCCGAATCTGCCTACGTCTCATCGCCCGAGGTC
genomic: TCAGGAAGCACATAGCGATAGATAAAAAGAGAGCACGGCATCTGCACCAGgtcagcacat ... caccaagcagATAAGCTTTATGGAGTCGCCCGAATCTGCCTACGTCTCATCGCCCGAGGTC
EST: gi|351047391|gb|FQ451903.1|FQ451903
EST:     TCAGGAAGCACATAGCGATAGATAAAAAGAGAGCACGGCATCTGCACCAG                         ATAAGCTTTATGGAGTCGCCCGAATCTGCCTACGTCTCATCGCCCGAGGTC
genomic: TCAGGAAGCACATAGCGATAGATAAAAAGAGAGCACGGCATCTGCACCAGgtcagcacat ... caccaagcagATAAGCTTTATGGAGTCGCCCGAATCTGCCTACGTCTCATCGCCCGAGGTC
EST: gi|351038420|gb|FQ461112.1|FQ461112
EST:     TCAGGAAGCACATAGCGATAGATAAAAAGAGAGCACGGCATCTGCACCAG                         ATAAGCTTTATGGAGTCGCCCGAATCTGCCTACGTCTCATCGCCCGAGGTC
genomic: TCAGGAAGCACATAGCGATAGATAAAAAGAGAGCACGGCATCTGCACCAGgtcagcacat ... caccaagcagATAAGCTTTATGGAGTCGCCCGAATCTGCCTACGTCTCATCGCCCGAGGTC
EST: gi|351031620|gb|FQ459877.1|FQ459877
EST:     TCAGGAAGCACATAGCGATAGATAAAAAGAGAGCACGGCATCTGCACCAG                         ATAAGCTTTATGGAGTCGCCCGAATCTGCCTACGTCTCATCGCCCGAGGTC
genomic: TCAGGAAGCACATAGCGATAGATAAAAAGAGAGCACGGCATCTGCACCAGgtcagcacat ... caccaagcagATAAGCTTTATGGAGTCGCCCGAATCTGCCTACGTCTCATCGCCCGAGGTC
EST: gi|351047415|gb|FQ451927.1|FQ451927
EST:     TCAGGAAGCACATAGCGATAGATAAAAAGAGAGCACGGCATCTGCACCAG                         ATAAGCTTTATGGAGTCGCCCGAATCTGCCTACGTCTCATCGCCCGAGGTC
genomic: TCAGGAAGCACATAGCGATAGATAAAAAGAGAGCACGGCATCTGCACCAGgtcagcacat ... caccaagcagATAAGCTTTATGGAGTCGCCCGAATCTGCCTACGTCTCATCGCCCGAGGTC
EST: gi|351052809|gb|FQ456536.1|FQ456536
EST:     TCAGGAAGCACATAGCGATAGATAAAAAGAGAGCACGGCATCTGCACCAG                         ATAAGCTTTATGGAGTCGCCCGAATCTGCCTACGTCTCATCGCCCGAGGTC
genomic: TCAGGAAGCACATAGCGATAGATAAAAAGAGAGCACGGCATCTGCACCAGgtcagcacat ... caccaagcagATAAGCTTTATGGAGTCGCCCGAATCTGCCTACGTCTCATCGCCCGAGGTC
EST: gi|352793787|gb|FQ481941.1|FQ481941
EST:     TCAGGAAGCACATAGCGATAGATAAAAAGAGAGCACGGCATCTGCACCAG                         ATAAGCTTTATGGAGTCGCCCGAATCTGCCTACGTCTCATCGCCCGAGGTC
genomic: TCAGGAAGCACATAGCGATAGATAAAAAGAGAGCACGGCATCTGCACCAGgtcagcacat ... caccaagcagATAAGCTTTATGGAGTCGCCCGAATCTGCCTACGTCTCATCGCCCGAGGTC
EST: gi|351052237|gb|FQ452391.1|FQ452391
EST:     TCAGGAAGCACATAGCGATAGATAAAAAGAGAGCACGGCATCTGCACCAG                         ATAAGCTTTATGGAGTCGCCCGAATCTGCCTACGTCTCATCGCCCGAGGTC
genomic: TCAGGAAGCACATAGCGATAGATAAAAAGAGAGCACGGCATCTGCACCAGgtcagcacat ... caccaagcagATAAGCTTTATGGAGTCGCCCGAATCTGCCTACGTCTCATCGCCCGAGGTC
EST: gi|351053072|gb|FQ456679.1|FQ456679
EST:     TCAGGAAGCACATAGCGATAGATAAAAAGAGAGCACGGCATCTGCACCAG                         ATAAGCTTTATGGAGTCGCCCGAATCTGCCTACGTCTCATCGCCCGAGGTC
genomic: TCAGGAAGCACATAGCGATAGATAAAAAGAGAGCACGGCATCTGCACCAGgtcagcacat ... caccaagcagATAAGCTTTATGGAGTCGCCCGAATCTGCCTACGTCTCATCGCCCGAGGTC
EST: gi|351056381|gb|FQ454242.1|FQ454242
EST:     TCAGGAAGCACATAGCGATAGATAAAAAGAGAGCACGGCATCTGCACCAG                         ATAAGCTTTATGGAGTCGCCCGAATCTGCCTACGTCTCATCGCCCGAGGTC
genomic: TCAGGAAGCACATAGCGATAGATAAAAAGAGAGCACGGCATCTGCACCAGgtcagcacat ... caccaagcagATAAGCTTTATGGAGTCGCCCGAATCTGCCTACGTCTCATCGCCCGAGGTC
EST: gi|349833330|gb|FQ416708.1|FQ416708
EST:     TCAGGAAGCACATAGCGATAGATAAAAAGAGAGCACGGCATCTGCACCAG                         ATAAGCTTTATGGAGTCGCCCGAATCTGCCTACGTCTCATCGCCCGAGGTC
genomic: TCAGGAAGCACATAGCGATAGATAAAAAGAGAGCACGGCATCTGCACCAGgtcagcacat ... caccaagcagATAAGCTTTATGGAGTCGCCCGAATCTGCCTACGTCTCATCGCCCGAGGTC
EST: gi|351054352|gb|FQ450435.1|FQ450435
EST:     TCAGGAAGCACATAGCGATAGATAAAAAGAGAGCACGGCATCTGCACCAG                         ATAAGCTTTATGGAGTCGCCCGAATCTGCCTACGTCTCATCGCCCGAGGTC
genomic: TCAGGAAGCACATAGCGATAGATAAAAAGAGAGCACGGCATCTGCACCAGgtcagcacat ... caccaagcagATAAGCTTTATGGAGTCGCCCGAATCTGCCTACGTCTCATCGCCCGAGGTC
EST: gi|351046045|gb|FQ441428.1|FQ441428
EST:     TCAGGAAGCACATAGCGATAGATAAAAAGAGAGCACGGCATCTGCACCAG                         ATAAGCTTTATGGAGTCGCCCGAATCTGCCTACGTCTCATCGCCCGAGGTC
genomic: TCAGGAAGCACATAGCGATAGATAAAAAGAGAGCACGGCATCTGCACCAGgtcagcacat ... caccaagcagATAAGCTTTATGGAGTCGCCCGAATCTGCCTACGTCTCATCGCCCGAGGTC
EST: gi|352791390|gb|FQ480969.1|FQ480969
EST:     TCAGGAAGCACATAGCGATAGATAAAAAGAGAGCACGGCATCTGCACCAG                         ATAAGCTTTATGGAGTCGCCCGAATCTGCCTACGTCTCATCGCCCGAGGTC
genomic: TCAGGAAGCACATAGCGATAGATAAAAAGAGAGCACGGCATCTGCACCAGgtcagcacat ... caccaagcagATAAGCTTTATGGAGTCGCCCGAATCTGCCTACGTCTCATCGCCCGAGGTC
EST: gi|351031627|gb|FQ459884.1|FQ459884
EST:     TCAGGAAGCACATAGCGATAGATAAAAAGAGAGCACGGCATCTGCACCAG                         ATAAGCTTTATGGAGTCGCCCGAATCTGCCTACGTCTCATCGCCCGAGGTC
genomic: TCAGGAAGCACATAGCGATAGATAAAAAGAGAGCACGGCATCTGCACCAGgtcagcacat ... caccaagcagATAAGCTTTATGGAGTCGCCCGAATCTGCCTACGTCTCATCGCCCGAGGTC
EST: gi|352793790|gb|FQ481944.1|FQ481944
EST:     TCAGGAAGCACATAGCGATAGATAAAAAGAGAGCACGGCATCTGCACCAG                         ATAAGCTTTATGGAGTCGCCCGAATCTGCCTACGTCTCATCGCCCGAGGTC
genomic: TCAGGAAGCACATAGCGATAGATAAAAAGAGAGCACGGCATCTGCACCAGgtcagcacat ... caccaagcagATAAGCTTTATGGAGTCGCCCGAATCTGCCTACGTCTCATCGCCCGAGGTC
EST: gi|110731764|gb|EE106471.1|EE106471
EST:     TCAGGAAGCACATAGCGATAGATAAAAAGAGAGCACGGCATCTGCACCAG                         ATAAGCTTTATGGAGTCGCCCGAATCTGCCTACGTCTCATCGCCCGAGGTC
genomic: TCAGGAAGCACATAGCGATAGATAAAAAGAGAGCACGGCATCTGCACCAGgtcagcacat ... caccaagcagATAAGCTTTATGGAGTCGCCCGAATCTGCCTACGTCTCATCGCCCGAGGTC
EST: gi|352786092|gb|FQ481887.1|FQ481887
EST:     TCAGGAAGCACATAGCGATAGATAAAAAGAGAGCACGGCATCTGCACCAG                         ATAAGCTTTATGGAGTCGCCCGAATCTGCCTACGTCTCATCGCCCGAGGTC
genomic: TCAGGAAGCACATAGCGATAGATAAAAAGAGAGCACGGCATCTGCACCAGgtcagcacat ... caccaagcagATAAGCTTTATGGAGTCGCCCGAATCTGCCTACGTCTCATCGCCCGAGGTC
EST: gi|351035492|gb|FQ463337.1|FQ463337
EST:     TCAGGAAGCACATAGCGATAGATAAAAAGAGAGCACGGCATCTGCACCAG                         ATAAGCTTTATGGAGTCGCCCGAATCTGCCTACGTCTCATCGCCCGAGGTC
genomic: TCAGGAAGCACATAGCGATAGATAAAAAGAGAGCACGGCATCTGCACCAGgtcagcacat ... caccaagcagATAAGCTTTATGGAGTCGCCCGAATCTGCCTACGTCTCATCGCCCGAGGTC
EST: gi|352790487|gb|FQ478127.1|FQ478127
EST:     TCAGGAAGCACATAGCGATAGATAAAAAGAGAGCACGGCATCTGCACCAG                         ATAAGCTTTATGGAGTCGCCCGAATCTGCCTACGTCTCATCGCCCGAGGTC
genomic: TCAGGAAGCACATAGCGATAGATAAAAAGAGAGCACGGCATCTGCACCAGgtcagcacat ... caccaagcagATAAGCTTTATGGAGTCGCCCGAATCTGCCTACGTCTCATCGCCCGAGGTC
EST: gi|351029639|gb|FQ427479.1|FQ427479
EST:     TCAGGAAGCACATAGCGATAGATAAAAAGAGAGCACGGCATCTGCACCAG                         ATAAGCTTTATGGAGTCGCCCGAATCTGCCTACGTCTCATCGCCCGAGGTC
genomic: TCAGGAAGCACATAGCGATAGATAAAAAGAGAGCACGGCATCTGCACCAGgtcagcacat ... caccaagcagATAAGCTTTATGGAGTCGCCCGAATCTGCCTACGTCTCATCGCCCGAGGTC
EST: gi|351032704|gb|FQ462418.1|FQ462418
EST:     TCAGGAAGCACATAGCGATAGATAAAAAGAGAGCACGGCATCTGCACCAG                         ATAAGCTTTATGGAGTCGCCCGAATCTGCCTACGTCTCATCGCCCGAGGTC
genomic: TCAGGAAGCACATAGCGATAGATAAAAAGAGAGCACGGCATCTGCACCAGgtcagcacat ... caccaagcagATAAGCTTTATGGAGTCGCCCGAATCTGCCTACGTCTCATCGCCCGAGGTC
EST: gi|352786228|gb|FQ478839.1|FQ478839
EST:     TCAGGAAGCACATAGCGATAGATAAAAAGAGAGCACGGCATCTGCACCAG                         ATAAGCTTTATGGAGTCGCCCGAATCTGCCTACGTCTCATCGCCCGAGGTC
genomic: TCAGGAAGCACATAGCGATAGATAAAAAGAGAGCACGGCATCTGCACCAGgtcagcacat ... caccaagcagATAAGCTTTATGGAGTCGCCCGAATCTGCCTACGTCTCATCGCCCGAGGTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attctccctatctcttctctttctttacattcctttctctctttacaccaagcagATAAGCTTTATGGAGTCGCCCGAATCTGCCTACGTCTCATCGCCCGAGGTCCCGCCCAAGCGATCCTCGCCTCCCAGATCCCCCACTTCAG
 ctctgat  putative branch site (score: 4)
       ctatctcttctctttc  putative PPT
                   tttcttta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tcccctcccatctgtttgccgtttctaaactccgataatgctctgattctccctatctcttctctttctttacattcctttctctctttacaccaagcagATAAGCTTTATGGAGTCGCCCGAATCTGCCTACGTCTCATCGCCCGAGGTCCCGCCCAAGCGATCCTCGCCTCCCAGATCCCCCACTTCAG

- ccctccc
- - - - - - -gtttgcc