Sequence
atgc intronic sequence ATGC exonic sequence...gcaatgtatcctatatcttgaaggtgcatattcttatcatccataaagtgtgcaattttggttgctttatccatttcttttgttctttttgggtggccagGTGAAACCTTTGAACCACTCTCATGATTTGCCACCTCCAGGGAAAAAGGGCCGCACCTATATATGCAGCTGCATGATTTTCATGCGCCCCACTGATGGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0019g04760.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA08G09360.1 (Glycine max), 3'ss of exon 2
gcaatgtatcctatatcttgaaggtgcatattcttatcatccataaagtgtgcaattttgg-ttgctttatccatt---tcttttgttctttttgggtggccagGTGAAACCTTTGAACCACTCTCATGATTTGCCACCTCCAGGGAAAAAGGGCCGCACCTATATATGCAGCTGCATGATTTTCATGCGCCCCACTGATGGAG
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----tcttttttatcttctgtctgaatatatgctgcagttttagtgtgaatccatttttttcttgtattattaactttgttttttaatttctttgtgagaccagATTAAACCATTGAACCATTCTCATGATTTACCACCACCAGGAAAAAAGGGCCGTCCTTACATTTGTAGTTGCATGATTTTCCTCCGCCCTACCAATGGAG
upper sequence: Vv13s0019g04760.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT4G01220.1 (Arabidopsis thaliana), 3'ss of exon 2
gcaatgtatcctatatcttgaaggtgcatattcttatcatccataaagtgtgcaattttggttgctttatccatttcttttgttctttttgggtggccagGTGAAACCTTTGAACCACTCTCATGATTTGCCACCTCCAGGGAAAAAGGGCCGCACCTATATATGCAGCTGCATGATTTTCATGCGCCCCACTGATGGAG
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-----gtatg-tatatttttttctcagacatcttcttcattgatggt-------atttggattagtgtacttatta---ttgtcttgattatgttgtcagATTAAGCCTTTGGATCACTCTCATGATTTACCACCTCCGGGTAAAAAAGGAAGGACTTATATTTGTAGCTGTATGATTTTCTTGCGTCCCACTAATGGCG
upper sequence: Vv13s0019g04760.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: PP1S19_296V6.1 (Physcomitrella patens), 3'ss of exon 3
----------------------------------------------------------------------gcaatgta-tcctatatcttgaaggtgcatattcttatcatccataaagtgtgcaattttggttgctttatccatttcttttgttctttttgggtggccagGTGAAACCTTTGAACCACTCTCATGATTTGCCACCTCCAGGGAAAAAGGGCCGCACCTATATATGCAGCTGCATGATTTTCATGCGCCCCACTGATGGAG
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gtactctttggcctcgtcatcttgttgtaatttagtagctcagaagtctgtagcgatacctcgtagtttcttgttggacttcttttctttcgagaggaaaaatcttaacacattccaagttcatcgccgcttcttttccagttatttagattggt-tgttggcgttggcagTTGAAAACAGAGTACCATTCACATGCTTTACCGCCACCAGGGAAGAAGGGCCGCACGTATATCTGCAGCTGCATGCTTTTTCTGAAGTCTACGGAAGGTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110729936|gb|EE106444.1|EE106444EST: CTTATTTGCAAGGAGATCATGATGTGTACTTCACTGATGACATGACTGCA GTGAAACCTTTGAACCACTCTCATGATTTGCCACCTCCAGGGAAAAAGGGC
genomic: CTTATTTGCAAGGAGATCATGATGTGTACTTCACTGATGACATGACTGCAgtacgtacac ... gggtggccagGTGAAACCTTTGAACCACTCTCATGATTTGCCACCTCCAGGGAAAAAGGGC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aagtgtgcaattttggttgctttatccatttcttttgttctttttgggtggccagGTGAAACCTTTGAACCACTCTCATGATTTGCCACCTCCAGGGAAAAAGGGCCGCACCTATATATGCAGCTGCATGATTTTCATGCGCCCCACTGATGGAG
ctttatccatttcttt CT-rich tract
atttctttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gcaatgtatcctatatcttgaaggtgcatattcttatcatccataaagtgtgcaattttggttgctttatccatttcttttgttctttttgggtggccagGTGAAACCTTTGAACCACTCTCATGATTTGCCACCTCCAGGGAAAAAGGGCCGCACCTATATATGCAGCTGCATGATTTTCATGCGCCCCACTGATGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
-caatgta
- - - - - - - - - - - -gtgcata
- - - - - - - - - - - - - - - - - - tcatcca