Sequence
atgc intronic sequence ATGC exonic sequencegtatgtgtgctagaatgaattgatttatgatcttcagttatgaccataattgaatttttaattgatgctttcttctcacactaaaatcaatgcagGATCACCACTGTTTGTGGATAAACAATTGTGTTGGTTATTGGAACTATAAGGCCTTTGTGATGCTTGTCTTATATGCAACTATTGGAAGCATCCACTCTA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0019g04670.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA20G32280.1 (Glycine max), 3'ss of exon 2
gtatgtgtgctagaatgaattgatttatg--atcttcagttatgac--cataattgaattttt-aattgatgctttcttctcac--------------actaaaatcaatgcagGATCACCACTGTTTGTGGATAAACAATTGTGTTGGTTATTGGAACTATAAGGCCTTTGTGATGCTTGTCTTATATGCAACTATTGGAAGCATCCACTCTA
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gtaggtcggttgcgtctcggcaattgatgttactttgagcttcaatttcacatttgagttcctgaagtaaggatttattttgaccattttatttgatggctaaatatgatgtagGATCATCACTGCTTGTGGATAAATAACTGTGTTGGTTATTGGAATTATAAGGCTTTCTTTGTTTTTGTATTCTATGCCACCACGGCAAGTATTTATTCTA
upper sequence: Vv13s0019g04670.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA10G35270.2 (Glycine max), 3'ss of exon 2
-------gtatgtgtgctag-aatgaattgatttatgatcttcagttatgaccataa----ttgaatttttaattgatgctttcttctca---cactaaaatcaatgcagGATCACCACTGTTTGTGGATAAACAATTGTGTTGGTTATTGGAACTATAAGGCCTTTGTGATGCTTGTCTTATATGCAACTATTGGAAGCATCCACTCTA
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gtaggtcagttgcatctcggcaatggatgttactttgagcttcatttttgcatttgagttcctgaaggatttattttgacctttttgtctggttgctgaatttgatctagGATCATCACTGCTTGTGGATAAATAACTGTGTTGGCTATTGGAATTATAAGACATTCTTTGTTTTTGTATTCTATGCCACCATGGCAAGTATTTATTCTAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161706105|gb|FC056248.1|FC056248EST: CTCCCAGGGCTCATCATTGCCGTGTTTGTAGAAGGTGTGTTTTAAGGATG GATCACCACTGTTTGTGGATAAACAATTGTGTTGGTTATTGGAACTATAAG
genomic: CTCCCAGGGCTCATCATTGCCGTGTTTGTAGAAGGTGTGTTTTAAGGATGgtatgtgtgc ... atcaatgcagGATCACCACTGTTTGTGGATAAACAATTGTGTTGGTTATTGGAACTATAAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgaccataattgaatttttaattgatgctttcttctcacactaaaatcaatgcagGATCACCACTGTTTGTGGATAAACAATTGTGTTGGTTATTGGAACTATAAGGCCTTTGTGATGCTTGTCTTATATGCAACTATTGGAAGCATCCACTCTA
cactaaa putative branch site (score: 2)
ataattgaatttttaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgtgtgctagaatgaattgatttatgatcttcagttatgaccataattgaatttttaattgatgctttcttctcacactaaaatcaatgcagGATCACCACTGTTTGTGGATAAACAATTGTGTTGGTTATTGGAACTATAAGGCCTTTGTGATGCTTGTCTTATATGCAACTATTGGAAGCATCCACTCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG