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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctatgatttgctttaaaccgtatgtttgtcctctataaggtttgcttcatgctgtagtactgcatatttgaatcaatttcatgtggatggattttctcagGTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATTGCTGGAG

Basic information

species Vitis vinifera
transcript Vv13s0019g04480.t01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30137599|gb|CB922937.1|CB922937
EST:     GACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCCCAT                         GTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATTGCTGGAG
genomic: GACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCCCATgtaagtttgt ... attttctcagGTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATTGCTGGAG
EST: gi|71864075|gb|DT013130.1|DT013130
EST:     GACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCCCAT                         GTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATTGCTGGAG
genomic: GACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCCCATgtaagtttgt ... attttctcagGTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATTGCTGGAG
EST: gi|110687648|gb|EE065296.1|EE065296
EST:     GACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCCCAT                         GTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATAGCTGGAG
genomic: GACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCCCATgtaagtttgt ... attttctcagGTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATTGCTGGAG
EST: gi|71863003|gb|DT012058.1|DT012058
EST:     GACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCCCAT                         GTACGATGAAATGGCTAGCAAGTATAATGTGGAGCATATTGCTGGAG
genomic: GACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCCCATgtaagtttgt ... attttctcagGTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATTGCTGGAG
EST: gi|110728204|gb|EE103570.1|EE103570
EST:     GACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCCCAT                         GTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATTGCTGGAG
genomic: GACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCCCATgtaagtttgt ... attttctcagGTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATTGCTGGAG
EST: gi|351023138|gb|FQ432521.1|FQ432521
EST:     GACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCCCAT                         GTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATAGCTGGAG
genomic: GACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCCCATgtaagtttgt ... attttctcagGTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATTGCTGGAG
EST: gi|351023529|gb|FQ432912.1|FQ432912
EST:     GACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCCCAT                         GTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATAGCTGGAG
genomic: GACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCCCATgtaagtttgt ... attttctcagGTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATTGCTGGAG
EST: gi|351038074|gb|FQ460816.1|FQ460816
EST:     GACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCCCAT                         GTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATAGCTGGAG
genomic: GACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCCCATgtaagtttgt ... attttctcagGTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATTGCTGGAG
EST: gi|352794243|gb|FQ479485.1|FQ479485
EST:     GACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCCCAT                         GTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATTGCTGGAG
genomic: GACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCCCATgtaagtttgt ... attttctcagGTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATTGCTGGAG
EST: gi|71860280|gb|DT009335.1|DT009335
EST:     GACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCCCAT                         GTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATTGCTGGAG
genomic: GACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCCCATgtaagtttgt ... attttctcagGTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATTGCTGGAG
EST: gi|30132011|gb|CB917350.1|CB917350
EST:     GACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCCCAT                         GTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATTGCTGGAG
genomic: GACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCCCATgtaagtttgt ... attttctcagGTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATTGCTGGAG
EST: gi|71861873|gb|DT010928.1|DT010928
EST:     GACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCCCAT                         GTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATTGCTGGAG
genomic: GACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCCCATgtaagtttgt ... attttctcagGTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATTGCTGGAG
EST: gi|161716356|gb|FC066867.1|FC066867
EST:     GACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCCCAT                         GTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATTGCTGGAG
genomic: GACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCCCATgtaagtttgt ... attttctcagGTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATTGCTGGAG
EST: gi|352786945|gb|FQ475978.1|FQ475978
EST:     GACATCAAGTTGAATAATACTATTCTTGCTGAGGACAAACACTTGCCCAT                         GTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATTGCTGGAG
genomic: GACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCCCATgtaagtttgt ... attttctcagGTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATTGCTGGAG
EST: gi|110693709|gb|EE070177.1|EE070177
EST:     GACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCCCAT                         GTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATTGCTGGAG
genomic: GACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCCCATgtaagtttgt ... attttctcagGTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATTGCTGGAG
EST: gi|349824265|gb|FQ417652.1|FQ417652
EST:     GACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCCCAT                         GTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATTGCTGGAG
genomic: GACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCCCATgtaagtttgt ... attttctcagGTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATTGCTGGAG
EST: gi|352794240|gb|FQ479482.1|FQ479482
EST:     GACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCCCAT                         GTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATTGCTGGAG
genomic: GACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCCCATgtaagtttgt ... attttctcagGTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATTGCTGGAG
EST: gi|110391898|gb|EC956929.1|EC956929
EST:     GACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCCCAT                         GTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATTGCTGGAG
genomic: GACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCCCATgtaagtttgt ... attttctcagGTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATTGCTGGAG
EST: gi|71859146|gb|DT008201.1|DT008201
EST:     GACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCCCAT                         GTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATTGCTGGAG
genomic: GACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCCCATgtaagtttgt ... attttctcagGTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATTGCTGGAG
EST: gi|351028349|gb|FQ427245.1|FQ427245
EST:     GACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCCCAT                         GTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATAGCTGGAG
genomic: GACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCCCATgtaagtttgt ... attttctcagGTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATTGCTGGAG
EST: gi|110708040|gb|EE085129.1|EE085129
EST:     GACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCCCAT                         GTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATTGCTGGAG
genomic: GACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCCCATgtaagtttgt ... attttctcagGTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATTGCTGGAG
EST: gi|71860232|gb|DT009287.1|DT009287
EST:     GACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCCCAT                         GTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATTGCTGGAG
genomic: GACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCCCATgtaagtttgt ... attttctcagGTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATTGCTGGAG
EST: gi|71865109|gb|DT014164.1|DT014164
EST:     GACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCCCAT                         GTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATTGCTGGAG
genomic: GACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCCCATgtaagtttgt ... attttctcagGTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATTGCTGGAG
EST: gi|71864474|gb|DT013529.1|DT013529
EST:     GACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCCCAT                         GTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATTGCTGGAG
genomic: GACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCCCATgtaagtttgt ... attttctcagGTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATTGCTGGAG
EST: gi|351013485|gb|FQ425516.1|FQ425516
EST:     GACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCCCAT                         GTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATAGCTGGAG
genomic: GACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCCCATgtaagtttgt ... attttctcagGTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATTGCTGGAG
EST: gi|110703696|gb|EE080770.1|EE080770
EST:     GACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCCCAT                         GTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATTGCTGGAG
genomic: GACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCCCATgtaagtttgt ... attttctcagGTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATTGCTGGAG
EST: gi|71863288|gb|DT012343.1|DT012343
EST:     GACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCCCAT                         GTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATTGCTGGAG
genomic: GACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCCCATgtaagtttgt ... attttctcagGTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATTGCTGGAG
EST: gi|27581929|gb|CB004624.1|CB004624
EST:     CAAACACTTGCCCAT                         GTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATAGCTGGAG
genomic: CAAACACTTGCCCATgtaagtttgt ... attttctcagGTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATTGCTGGAG
EST: gi|351026422|gb|FQ428434.1|FQ428434
EST:     GACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCCCAT                         GTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATTGCTGGAG
genomic: GACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCCCATgtaagtttgt ... attttctcagGTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATTGCTGGAG
EST: gi|110689258|gb|EE065335.1|EE065335
EST:     GACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCCCAT                         GTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATTGCTGGAG
genomic: GACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCCCATgtaagtttgt ... attttctcagGTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATTGCTGGAG
EST: gi|352786996|gb|FQ476029.1|FQ476029
EST:     GACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCCCAT                         GTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATTGCTGGAG
genomic: GACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCCCATgtaagtttgt ... attttctcagGTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATTGCTGGAG
EST: gi|161712338|gb|FC061663.1|FC061663
EST:     GACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCCCAT                         GTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATTGCTGGAG
genomic: GACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCCCATgtaagtttgt ... attttctcagGTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATTGCTGGAG
EST: gi|71862297|gb|DT011352.1|DT011352
EST:     GACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCCCAT                         GTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATTGCTGGAG
genomic: GACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCCCATgtaagtttgt ... attttctcagGTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATTGCTGGAG
EST: gi|30125628|gb|CB910967.1|CB910967
EST:     GACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCCCAT                         GTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATTGCTGGAG
genomic: GACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCCCATgtaagtttgt ... attttctcagGTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATTGCTGGAG
EST: gi|351038237|gb|FQ460929.1|FQ460929
EST:     GACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCCCAT                         GTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATTGCTGGAG
genomic: GACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCCCATgtaagtttgt ... attttctcagGTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATTGCTGGAG
EST: gi|352786981|gb|FQ476014.1|FQ476014
EST:     GACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCCCAT                         GTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATTGCTGGAG
genomic: GACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCCCATgtaagtttgt ... attttctcagGTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATTGCTGGAG
EST: gi|110685346|gb|EE063661.1|EE063661
EST:     GACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCCCAT                         GTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATTGCTGGAG
genomic: GACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCCCATgtaagtttgt ... attttctcagGTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATTGCTGGAG
EST: gi|352790622|gb|FQ475380.1|FQ475380
EST:     GACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCCCAT                         GTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATTGCTGGAG
genomic: GACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCCCATgtaagtttgt ... attttctcagGTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATTGCTGGAG
EST: gi|71860319|gb|DT009374.1|DT009374
EST:     GACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCCCAT                         GTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATTGCTGGAG
genomic: GACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCCCATgtaagtttgt ... attttctcagGTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATTGCTGGAG
EST: gi|71864456|gb|DT013511.1|DT013511
EST:     GACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCCCAT                         GTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATTGCTGGAG
genomic: GACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCCCATgtaagtttgt ... attttctcagGTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATTGCTGGAG
EST: gi|110685881|gb|EE062990.1|EE062990
EST:     GACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCCCAT                         GTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATAGCTGGAG
genomic: GACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCCCATgtaagtttgt ... attttctcagGTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATTGCTGGAG
EST: gi|71862322|gb|DT011377.1|DT011377
EST:     GACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCCCAT                         GTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATTGCTGGAG
genomic: GACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCCCATgtaagtttgt ... attttctcagGTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATTGCTGGAG
EST: gi|30129600|gb|CB914939.1|CB914939
EST:     GACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCCCAT                         GTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATTGCTGGAG
genomic: GACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCCCATgtaagtttgt ... attttctcagGTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATTGCTGGAG
EST: gi|71855237|gb|DT004292.1|DT004292
EST:     GACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCCCAT                         GTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATTGCTGGAG
genomic: GACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCCCATgtaagtttgt ... attttctcagGTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATTGCTGGAG
EST: gi|110726165|gb|EE101710.1|EE101710
EST:     GACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCCCAT                         GTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATTGCTGGAG
genomic: GACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCCCATgtaagtttgt ... attttctcagGTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATTGCTGGAG
EST: gi|110715240|gb|EE093065.1|EE093065
EST:     GACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCCCAT                         GTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATTGCTGGAG
genomic: GACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCCCATgtaagtttgt ... attttctcagGTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATTGCTGGAG
EST: gi|30129081|gb|CB914420.1|CB914420
EST:     GACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCCCAT                         GTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATTGCTGGAG
genomic: GACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCCCATgtaagtttgt ... attttctcagGTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATTGCTGGAG
EST: gi|110698283|gb|EE075646.1|EE075646
EST:     CAAGTTG-TTAACGCTATTCTTGCTGAGGACAAACACTTGCCCAT                         GTACGATGAAATGGCTATCAAGTATAATGTGGAGTATATAGCTGGAG
genomic: CAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCCCATgtaagtttgt ... attttctcagGTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATTGCTGGAG
EST: gi|71864037|gb|DT013092.1|DT013092
EST:     GACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCCCAT                         GTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATTGCTGGAG
genomic: GACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCCCATgtaagtttgt ... attttctcagGTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATTGCTGGAG
EST: gi|46917497|gb|CN546826.1|CN546826
EST:     GACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCCCAT                         GTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATTGCTGGAG
genomic: GACATCAAGTTGAATAATGCTATTCTTGCTGAGGACAAACACTTGCCCATgtaagtttgt ... attttctcagGTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATTGCTGGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcatgctgtagtactgcatatttgaatcaatttcatgtggatggattttctcagGTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATTGCTGGAG
                                              ttttctc  CT-rich tract
                  atatttgaatcaattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ctatgatttgctttaaaccgtatgtttgtcctctataaggtttgcttcatgctgtagtactgcatatttgaatcaatttcatgtggatggattttctcagGTACGATGAAATGGCTAGCAAGTATAATGTGGAGTATATTGCTGGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - -ccgtatg
- - - - - - - - - - - - - tgtcctc
- - - - - - - - - - - - - - - - - - - - - - - - -tgctgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgcata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaatcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgtgg