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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgacatttatccttgatccaacccgctatcccctgctgggccagcccagttgacctcattggattcagcttaaactataacatttgcatttgtggtaaacagGTGGAGATGGTGGTACGACAGAAAAAACCAGCTTTACTAGGCAAGAGGCAGAAGTGCTTTTATCTGTTTGTTTGTATCTGTATGTTTTACTGCGTGTGGA

Basic information

species Vitis vinifera
transcript Vv13s0019g04050.t01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110410684|gb|EC976375.1|EC976375
EST:     TACGGCGAAAACCGGATGTCCAAAGTCCGACCCAGATGGGATTTCTACTG                         GTGGAGATGGTGGTACGACAGAAAAAACCAGCTTTACTAGGCAAGAGGCAG
genomic: TACGGCGAAAACCGGATGTCCAAAGTCCGACCCAGATGGGATTTCTACTGgtatgtgaca ... tggtaaacagGTGGAGATGGTGGTACGACAGAAAAAACCAGCTTTACTAGGCAAGAGGCAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agttgacctcattggattcagcttaaactataacatttgcatttgtggtaaacagGTGGAGATGGTGGTACGACAGAAAAAACCAGCTTTACTAGGCAAGAGGCAGAAGTGCTTTTATCTGTTTGTTTGTATCTGTATGTTTTACTGCGTGTGGA
                           ctataac  putative branch site (score: 3)
                      ttaaactataacattt  TA-rich tract