1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...aaaatatccttcacctaacatggcagagtttgatttacaaggaaattagggttttggttttgcaattgcaaaatattttttgaaaatgtttcttgtttagGGCTAGTGATAAGTGTCAGAAAGAGAAGCGAAAGACGATTAATGGTGATGATCTGCTTTGGGCGATGGCGACCCTAGGATTTGAAGATTATATTGAACCA
species | Vitis vinifera |
transcript | Vv13s0019g03600.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GACACTGTCCAATAGTGCGTCTCCGAGTTCATCAGTTTCATCACCAGCGA GGCTAGTGATAAGTGTCAGAAAGAGAAGCGAAAGACGATTAATGGTGATGAEST: gi|110690518|gb|EE067687.1|EE067687
genomic: GACACTGTCCAAGAGTGCGTCTCCGAGTTCATCAGTTTCATCACCAGCGAgtacgcggat ... tcttgtttagGGCTAGTGATAAGTGTCAGAAAGAGAAGCGAAAGACGATTAATGGTGATGA
EST: GACACTGTCCAAGAGTGCGTCTCCGAGTTCATCAGTTTCATCACCAGCGA GGCTAGTGATAAGTGTCAGAAAGAGAAGCGAAAGACGATTAATGGTGATGAEST: gi|22014931|gb|BQ799965.1|BQ799965
genomic: GACACTGTCCAAGAGTGCGTCTCCGAGTTCATCAGTTTCATCACCAGCGAgtacgcggat ... tcttgtttagGGCTAGTGATAAGTGTCAGAAAGAGAAGCGAAAGACGATTAATGGTGATGA
EST: GACACTGTCCAAGAGTGCGTCTCCGAGTTCATCAGTTTCATCACCAGCGA GGCTAGTGATAAGTGTCAGAAAGAGAAGCGAAAGACGATTAATGGTGATGAEST: gi|110425488|gb|EC991873.1|EC991873
genomic: GACACTGTCCAAGAGTGCGTCTCCGAGTTCATCAGTTTCATCACCAGCGAgtacgcggat ... tcttgtttagGGCTAGTGATAAGTGTCAGAAAGAGAAGCGAAAGACGATTAATGGTGATGA
EST: CGAGTTCATCAGTTTCATCACCAGCGA GGCTAGTGATAAGTGTCAGAAAGAGAAGCGAAAGACGATTAATGGTGATGAEST: gi|110427866|gb|EC994320.1|EC994320
genomic: CGAGTTCATCAGTTTCATCACCAGCGAgtacgcggat ... tcttgtttagGGCTAGTGATAAGTGTCAGAAAGAGAAGCGAAAGACGATTAATGGTGATGA
EST: GACACTGTCCAAGAGTGCGTCTCCGAGTTCATCAGTTTCATCACCAGCGA GGCTAGTGATAAGTGTC
genomic: GACACTGTCCAAGAGTGCGTCTCCGAGTTCATCAGTTTCATCACCAGCGAgtacgcggat ... tcttgtttagGGCTAGTGATAAGTGTC
ttagggttttggttttgcaattgcaaaatattttttgaaaatgtttcttgtttagGGCTAGTGATAAGTGTCAGAAAGAGAAGCGAAAGACGATTAATGGTGATGATCTGCTTTGGGCGATGGCGACCCTAGGATTTGAAGATTATATTGAACCA
tttcttgttt CT-rich tract
aaaatattttttgaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaatatccttcacctaacatggcagagtttgatttacaaggaaattagggttttggttttgcaattgcaaaatattttttgaaaatgtttcttgtttagGGCTAGTGATAAGTGTCAGAAAGAGAAGCGAAAGACGATTAATGGTGATGATCTGCTTTGGGCGATGGCGACCCTAGGATTTGAAGATTATATTGAACCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
aaaatat
- - - -ccttcac
- - - - - - - - -acatggc
- - - - - - - - - - - - - - - - - - - aaggaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaatg