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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgttttgttctcaagcacctaattgggtgaagtttggaattaccgttctgatgctcattttcaactctgtatgtgtagATGGTGCCTGACATTGCGTTTGGCAGGCATACTCGAGTTGTTTTGGATGTTGGATGTGGTGTGGCCAGTTTTGGTGCCTATTTGTTATCACGGAATGTCA

Basic information

species Vitis vinifera
transcript Vv13s0019g02250.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0019g02250.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G042295_T01 (Zea mays), 3'ss of exon 2
gttgttttgttctcaagcacct----aattgggtgaagtttggaattaccgttctgatg-----ctcattttcaactctgtatgtgtagATGGTGCCTGACATTGCGTTTGGCAGGCATACTCGAGTTGTTTTGGATGTTGGATGTGGTGTGGCCAGTTTTGGTGCCTATTTGTTATCACGGAATGTCA
     |||| | |||| ||       || ||  |||| |||  ||| ||   |||||       | | | ||   |||||    |  ||||||| ||  |  |||| |||||    |||||| |||||||  |||||||||| ||||| || || |||||||||||||||||  | |||||  ||||| 
----gtttgatgtcaaacattcttcaaactgcttgaaattt--aatcacgactctgactagagccacctgtttccctctgctcatccagATGGTACCAAATGTTGCATTTGGATCTCATACTAGAGTTGTCCTGGATGTTGGTTGTGGAGTAGCAAGTTTTGGTGCCTATTTACTTTCACGTGATGTCC

upper sequence: Vv13s0019g02250.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G092120_T02 (Zea mays), 3'ss of exon 2
gttgttttgttctcaagcacct-----aattgggtgaagtttggaattaccgttctgat----gctcattttcaactctgtatgtgtagATGGTGCCTGACATTGCGTTTGGCAGGCATACTCGAGTTGTTTTGGATGTTGGATGTGGTGTGGCCAGTTTTGGTGCCTATTTGTTATCACGGAATGTCA
     || | | ||||  |        || ||  || | |||  |||      |||||     ||    | |   ||||||  ||  ||||||| ||  |  |||| |||||    |||||| ||||||| ||||||||||| ||||| || || ||||||||||| |||||  | |||||  ||||| 
----gttcgatgtcaaatattcttcaaaactgcttggaattt--aatccttactctgactagagcaacctgttccctctgttcgtccagATGGTACCAAATGTTGCATTTGGATCTCATACTAGAGTTGTCTTGGATGTTGGCTGTGGAGTAGCAAGTTTTGGTGCATATTTACTTTCACGTGATGTCC

upper sequence: Vv13s0019g02250.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT2G39750.1 (Arabidopsis thaliana), 3'ss of exon 2
-------gttgttttgttctcaagcacctaatt---gggtgaagtttggaattaccgtt----ctgatgctca-ttttcaactctgtatgtgtagATGGTGCCTGACATTGCGTTTGGCAGGCATACTCGAGTTGTTTTGGATGTTGGATGTGGTGTGGCCAGTTTTGGTGCCTATTTGTTATCACGGAATGTCA
        || ||         ||  | |  ||   | || || | |  |  || | ||    |||||| | |  | |  | | ||| | || |||||||  |||| ||| ||||||||| ||||| | | |||| | |||||||||| ||||||||||| ||||||||||| ||| | || || ||  ||||||
gtggctcatttttccaagtagtagttcttgtttttcgcgtcaactgtttatgtatcttttcatctgatgttgagctctggagtttgtgtctgcagATGGTTTCTGATATTACGTTTGGCAAGCATATTAGGGTTGCTATGGATGTTGGTTGTGGTGTGGCGAGTTTTGGTGCTTATCTATTGTCTCGTGATGTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgggtgaagtttggaattaccgttctgatgctcattttcaactctgtatgtgtagATGGTGCCTGACATTGCGTTTGGCAGGCATACTCGAGTTGTTTTGGATGTTGGATGTGGTGTGGCCAGTTTTGGTGCCTATTTGTTATCACGGAATGTCA
                      ttctgat  putative branch site (score: 3)
                                 attttcaa  TA-rich tract