1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtacgtaatacaggctaaatttttgtcctgttacttaatccaagcgtacacaactttaatcctttgatttaccaccttgtctgagcagTGCTGATCAGTATGGAAGTCGGTTTATTCAACAAAAACTCGAGACTGCAACAACAGAAGAAAAGGACATGGTTTTCCATGAAATTATGCCCCAAGCCCTT
species | Vitis vinifera |
transcript | Vv13s0019g02000.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACTAAGTGTTTTGAACTTTCAGAAATTTCCGGTCATGTTGTTGAGTTCAG TGCTGATCAGTATGGAAGTCGGTTTATTCAACAAAAACTCGAGACTGCAACEST: gi|161719655|gb|FC069413.1|FC069413
genomic: ACTAAGTGTTTTGAACTTTCAGAAATTTCCGGTCATGTTGTTGAGTTCAGgtacgtaata ... gtctgagcagTGCTGATCAGTATGGAAGTCGGTTTATTCAACAAAAACTCGAGACTGCAAC
EST: ACTAAGTGTTTTGAACTTTCAGAAATTTCCGGTCATGTTGTTGAGTTCAG TGCTGATCAGTATGGAAGTCGGTTTATTCAACAAAAACTCGAGACTGCAAC
genomic: ACTAAGTGTTTTGAACTTTCAGAAATTTCCGGTCATGTTGTTGAGTTCAGgtacgtaata ... gtctgagcagTGCTGATCAGTATGGAAGTCGGTTTATTCAACAAAAACTCGAGACTGCAAC
cttaatccaagcgtacacaactttaatcctttgatttaccaccttgtctgagcagTGCTGATCAGTATGGAAGTCGGTTTATTCAACAAAAACTCGAGACTGCAACAACAGAAGAAAAGGACATGGTTTTCCATGAAATTATGCCCCAAGCCCTT
ccttgtct CT-rich tract
aactttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgtaatacaggctaaatttttgtcctgttacttaatccaagcgtacacaactttaatcctttgatttaccaccttgtctgagcagTGCTGATCAGTATGGAAGTCGGTTTATTCAACAAAAACTCGAGACTGCAACAACAGAAGAAAAGGACATGGTTTTCCATGAAATTATGCCCCAAGCCCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA