1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...cttgttttggatggggaaccttatataaaatggtgagtggtgctctctgtgatctttatgtattcaagatcattacggtatacttgtttgtgttgtgcagTGCATTATGAAGGCACTCTTGCAGAAACCGGTGGAGTTTTTGACACTACACATGAGGATAATACAGTGTTCTCATTTGAGCTTGGGAAAGGCACTGTAAT
species | Vitis vinifera |
transcript | Vv13s0019g01900.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGCCAAACCTGATGCACTTACTCCAACAGAGAATCTCCCTCTTGTTGATG TGCATTATGAAGGCACTCTTGCAGAAACCGGTGGAGTTTTTGACACTACACEST: gi|71877473|gb|DT026528.1|DT026528
genomic: AGCCAAACCTGATGCACTCACTCCAACAGAGAATCTCCCTCTTGTTGATGgtatgctctt ... tgttgtgcagTGCATTATGAAGGCACTCTTGCAGAAACCGGTGGAGTTTTTGACACTACAC
EST: AGCCAAACCTGATGCACTCACTCCAACAGAGAATCTCCCTCTTGTTGATG TGCATTATGAAGGCACTCTTGCAGAAACCGGTGGAGTTTTTGACACTACACEST: gi|351029576|gb|FQ427416.1|FQ427416
genomic: AGCCAAACCTGATGCACTCACTCCAACAGAGAATCTCCCTCTTGTTGATGgtatgctctt ... tgttgtgcagTGCATTATGAAGGCACTCTTGCAGAAACCGGTGGAGTTTTTGACACTACAC
EST: AGCCAAACCTGATGCACTTACTCCAACAGAGAATCTCCCTCTTGTTGATG TGCATTATGAAGGCACTCTTGCAGAAACCGGTGGAGTTTTTGACACTACACEST: gi|110424303|gb|EC990659.1|EC990659
genomic: AGCCAAACCTGATGCACTCACTCCAACAGAGAATCTCCCTCTTGTTGATGgtatgctctt ... tgttgtgcagTGCATTATGAAGGCACTCTTGCAGAAACCGGTGGAGTTTTTGACACTACAC
EST: AGCCAAACCTGATGCACTCACTCCAACAGAGAATCTCCCTCTTGTTGATG TGCATTATGAAGGCACTCTTGCAGAAACCGGTGGAGTTTTTGEST: gi|351024603|gb|FQ433018.1|FQ433018
genomic: AGCCAAACCTGATGCACTCACTCCAACAGAGAATCTCCCTCTTGTTGATGgtatgctctt ... tgttgtgcagTGCATTATGAAGGCACTCTTGCAGAAACCGGTGGAGTTTTTG
EST: AGCCAAACCTGATGCACTTACTCCAACAGAGAATCTCCCTCTTGTTGATG TGCATTATGAAGGCACTCTTGCAGAAACCGGTGGAGTTTTTGACACTACACEST: gi|77587550|gb|DV222939.1|DV222939
genomic: AGCCAAACCTGATGCACTCACTCCAACAGAGAATCTCCCTCTTGTTGATGgtatgctctt ... tgttgtgcagTGCATTATGAAGGCACTCTTGCAGAAACCGGTGGAGTTTTTGACACTACAC
EST: AGCCAAACCTGATGCACTCACTCCAACAGAGAATCTCCCTCTTGTTGATG TGCATTATGAAGGCACTCTTGCAGAAACCGGTGGAGTTTTTGACACTACACEST: gi|161711705|gb|FC059966.1|FC059966
genomic: AGCCAAACCTGATGCACTCACTCCAACAGAGAATCTCCCTCTTGTTGATGgtatgctctt ... tgttgtgcagTGCATTATGAAGGCACTCTTGCAGAAACCGGTGGAGTTTTTGACACTACAC
EST: AGCCAAACCTGATGCACTCACTCCAACAGAGAATCTCCCTCTTGTTGATG TGCATTATGAAGGCACTCTTGCAGAAACCGGTGGAGTEST: gi|110415144|gb|EC981021.1|EC981021
genomic: AGCCAAACCTGATGCACTCACTCCAACAGAGAATCTCCCTCTTGTTGATGgtatgctctt ... tgttgtgcagTGCATTATGAAGGCACTCTTGCAGAAACCGGTGGAGT
EST: AGCCAAACCTGATGCACTCACTCCAACAGAGAATCTCCCTCTTGTTGATG TGCATTATGAAGGCACTCTTGCAGAAACCGGTGGAGTTTTTGACACTACACEST: gi|110417551|gb|EC983617.1|EC983617
genomic: AGCCAAACCTGATGCACTCACTCCAACAGAGAATCTCCCTCTTGTTGATGgtatgctctt ... tgttgtgcagTGCATTATGAAGGCACTCTTGCAGAAACCGGTGGAGTTTTTGACACTACAC
EST: AGCCAAACCTGATGCACTCACTCCAACAGAGAATCTCCCTCTTGTTGATG TGCATTATGAAGGCACTCTTGCAGAAACCGGTGGAGTTTTTGACACTACACEST: gi|110422056|gb|EC988368.1|EC988368
genomic: AGCCAAACCTGATGCACTCACTCCAACAGAGAATCTCCCTCTTGTTGATGgtatgctctt ... tgttgtgcagTGCATTATGAAGGCACTCTTGCAGAAACCGGTGGAGTTTTTGACACTACAC
EST: AGCCAAACCTGATGCACTCACTCCAACAGAGAATCTCCCTCTTGTTGATG TGCATTATGAAGGCACTCTTGCAGAAACCGGTGGAGTTTTTGACACTACACEST: gi|30302283|gb|CB979077.1|CB979077
genomic: AGCCAAACCTGATGCACTCACTCCAACAGAGAATCTCCCTCTTGTTGATGgtatgctctt ... tgttgtgcagTGCATTATGAAGGCACTCTTGCAGAAACCGGTGGAGTTTTTGACACTACAC
EST: AGCCAAACCTGATGCACTCACTCCAACAGAGAATCTCCCTCTTGTTGATG TGCATTATGAAGGCACTCTTGCAGAAACCGGTGGAGTTTTTGACACTACAC
genomic: AGCCAAACCTGATGCACTCACTCCAACAGAGAATCTCCCTCTTGTTGATGgtatgctctt ... tgttgtgcagTGCATTATGAAGGCACTCTTGCAGAAACCGGTGGAGTTTTTGACACTACAC
tctgtgatctttatgtattcaagatcattacggtatacttgtttgtgttgtgcagTGCATTATGAAGGCACTCTTGCAGAAACCGGTGGAGTTTTTGACACTACACATGAGGATAATACAGTGTTCTCATTTGAGCTTGGGAAAGGCACTGTAAT
tttatgtatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttgttttggatggggaaccttatataaaatggtgagtggtgctctctgtgatctttatgtattcaagatcattacggtatacttgtttgtgttgtgcagTGCATTATGAAGGCACTCTTGCAGAAACCGGTGGAGTTTTTGACACTACACATGAGGATAATACAGTGTTCTCATTTGAGCTTGGGAAAGGCACTGTAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - ggatggg
- - - - - - - - - - - - ataaaat
- - - - - - - - - - - - - - - - -tgagtgg