1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ggattggggaggccaataggactgctgtttctagtttcatatatgctactttgctggtttcaacctccctagttatagaaataatatatgaatggcgcagGCGAAGGCGGGAGTCCAGTGTGGAACGAGAAGTTCACATTCAGAGTGGAATATCCAGGGGGCGAAGGCCAGTACAAGCTAGTTCTGAAAATCATGGACAA
species | Vitis vinifera |
transcript | Vv13s0019g01490.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGTTCTGATTCAATACAAAAATCAAGAGCGCAAGAGCAGCGTCGCCCGAG GCGAAGGCGGGAGTCCAGTGTGGAACGAGAAGTTCACATTCAGAGTGGAATEST: gi|37186622|gb|CF605975.1|CF605975
genomic: CGTTCTGATTCAATACAAAAATCAAGAGCGCAAGAGCAGCGTCGCCCGAGgtttgtaatt ... aatggcgcagGCGAAGGCGGGAGTCCAGTGTGGAACGAGAAGTTCACATTCAGAGTGGAAT
EST: CGTTCTGATTCAATACAAAAATCAAGAGCGCAAGAGCAGCGTCGCCCGAG GCGAAGGCGGGAGTCCAGTGTGGAACGAGAAGTTCACATTCAGAGTGGAATEST: gi|110690874|gb|EE068328.1|EE068328
genomic: CGTTCTGATTCAATACAAAAATCAAGAGCGCAAGAGCAGCGTCGCCCGAGgtttgtaatt ... aatggcgcagGCGAAGGCGGGAGTCCAGTGTGGAACGAGAAGTTCACATTCAGAGTGGAAT
EST: CGTTCTGATTCAATACAAAAATCAAGAGCGCAAGAGCAGCGTCGCCCGAG GCGAAGGCGGGAGTCCAGTGTGGAACGAGAAGTTCACATTCAGAGTGGAAT
genomic: CGTTCTGATTCAATACAAAAATCAAGAGCGCAAGAGCAGCGTCGCCCGAGgtttgtaatt ... aatggcgcagGCGAAGGCGGGAGTCCAGTGTGGAACGAGAAGTTCACATTCAGAGTGGAAT
ctactttgctggtttcaacctccctagttatagaaataatatatgaatggcgcagGCGAAGGCGGGAGTCCAGTGTGGAACGAGAAGTTCACATTCAGAGTGGAATATCCAGGGGGCGAAGGCCAGTACAAGCTAGTTCTGAAAATCATGGACAA
tagttatagaaataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggattggggaggccaataggactgctgtttctagtttcatatatgctactttgctggtttcaacctccctagttatagaaataatatatgaatggcgcagGCGAAGGCGGGAGTCCAGTGTGGAACGAGAAGTTCACATTCAGAGTGGAATATCCAGGGGGCGAAGGCCAGTACAAGCTAGTTCTGAAAATCATGGACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - -ggggagg
- - - - - - - - - - actgctg
- - - - - - - - - - - - - - - - - - - - - atgctac
- - - - - - - - - - - - - - - - - - - - - - - - - ttgctgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaataa