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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaagcaatttttcactgagaaatcaacagttttaatttttttggttggcaaacactatatctgtctattgtagaatcatcaaatgaatatttgggttgctgcagGACAATTCTTTGGGTTCCATGGTTCCAGATCTTCTCAATTTCCTCGGGATGATAAAGGG

Basic information

species Vitis vinifera
transcript Vv13s0019g01470.t01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161709477|gb|FC059722.1|FC059722
EST:     GGTTTTGTCCTTGCTAGCTCATCCAAGAAATGAAGCTGAACTGAACAATG                         GACAATTCTTTGGGTTCCATGGTTCCAGATCTTCTCAATTTCCTCGGGATG
genomic: GGTTTTGTCCTTGCAAGCTCATCCAAGAAATGAAGCTGAACTGAACAATGgcaagcaatt ... gttgctgcagGACAATTCTTTGGGTTCCATGGTTCCAGATCTTCTCAATTTCCTCGGGATG
EST: gi|33407399|gb|CF213026.1|CF213026
EST:     GGTTTTGTCCTTGCAAGCTCATCCAAGAAATGAAGCTGAACTGAACAATG                         GACAATTCTTTGGGTTCCATGGTTCCAGATCTTCTCAATTTCCTCGGGATG
genomic: GGTTTTGTCCTTGCAAGCTCATCCAAGAAATGAAGCTGAACTGAACAATGgcaagcaatt ... gttgctgcagGACAATTCTTTGGGTTCCATGGTTCCAGATCTTCTCAATTTCCTCGGGATG
EST: gi|110713125|gb|EE088770.1|EE088770
EST:     GGTTTTGTCCTTGCAAGCTCATCCAAGAAATGAAGCTGAACTGAACAATG                         GACAATTCTTTGGGTTCCATGGTTCCAGATCTTCTCAATTTCCTCGGGATG
genomic: GGTTTTGTCCTTGCAAGCTCATCCAAGAAATGAAGCTGAACTGAACAATGgcaagcaatt ... gttgctgcagGACAATTCTTTGGGTTCCATGGTTCCAGATCTTCTCAATTTCCTCGGGATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaacactatatctgtctattgtagaatcatcaaatgaatatttgggttgctgcagGACAATTCTTTGGGTTCCATGGTTCCAGATCTTCTCAATTTCCTCGGGATGATAAAGGG
                            atcaaatgaatattt  TA-rich tract