1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ctgtcatgctctttttggataaaaattaagcacatctttgtactatatatatgctaatgaattccaatcatgctcattgtttacaattatatcattgcagTGATGGGGGTTTCTTTAATGCTGTCATGACTTTTCCACCCGACTACCCAAACAGCCCTCCAACCGTGAGGTTCACCTCTGAGATATGGCATCCAAATG
species | Vitis vinifera |
transcript | Vv13s0019g00910.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AATATATTCGAGTGGAGCGTCACGATAATTGGGCCTCCTGATACGTTATA TGATGGGGGTTTCTTTAATGCTGTCATGACTTTTCCACCCGACTACCCAAAEST: gi|110408251|gb|EC973881.1|EC973881
genomic: AATATATTCGAGTGGAGCGTCACGATAATTGGGCCTCCTGATACGTTATAgtgagtagat ... atcattgcagTGATGGGGGTTTCTTTAATGCTGTCATGACTTTTCCACCCGACTACCCAAA
EST: AATATATTCGAGTGGAGCGTCACGATAATTGGGCCTCCTGATACGTTATA TGATGGGGGTTTCTTTAATGCTGTCATGACTTTTCCACCCGACTACCCAAAEST: gi|110687133|gb|EE064279.1|EE064279
genomic: AATATATTCGAGTGGAGCGTCACGATAATTGGGCCTCCTGATACGTTATAgtgagtagat ... atcattgcagTGATGGGGGTTTCTTTAATGCTGTCATGACTTTTCCACCCGACTACCCAAA
EST: AATATATTCGAGTGGAGCGTCACGATAATTGGGCCTCCTGATACGTTATA TGATGGGGGTTTCTTTAATGCTGTCATGACTTTTCCACCCGACTACCCAAA
genomic: AATATATTCGAGTGGAGCGTCACGATAATTGGGCCTCCTGATACGTTATAgtgagtagat ... atcattgcagTGATGGGGGTTTCTTTAATGCTGTCATGACTTTTCCACCCGACTACCCAAA
tatatatgctaatgaattccaatcatgctcattgtttacaattatatcattgcagTGATGGGGGTTTCTTTAATGCTGTCATGACTTTTCCACCCGACTACCCAAACAGCCCTCCAACCGTGAGGTTCACCTCTGAGATATGGCATCCAAATG
tgctaat putative branch site (score: 2)
attgtttacaattata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgtcatgctctttttggataaaaattaagcacatctttgtactatatatatgctaatgaattccaatcatgctcattgtttacaattatatcattgcagTGATGGGGGTTTCTTTAATGCTGTCATGACTTTTCCACCCGACTACCCAAACAGCCCTCCAACCGTGAGGTTCACCTCTGAGATATGGCATCCAAATG
- - catgctc
- - - - - - - - - ataaaaa
- - - - - - - - - - - - - -aagcaca
- - - - - - - - - - - - - - - - - - - - - - - - - - gctaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccaatca