1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...tctgaatttgtttatttgaagaacaaggtgtttttttcccttcctgaaatagtcattgttagaattttatagtctgaaatggtttttttgtggatgacagTCCAATATGAGAATTTTGGTTACGGGAGGGGCTGGATTCATTGGCTCTCACCTTGTAGACAAATTGATGCAGAATGAGAAGAATGAG
species | Vitis vinifera |
transcript | Vv13s0019g00840.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGAAGCCGCCACCGACGCCGTCTCCTCTGCGAAATTCTAAGTTTTTCCAG TCCAATATGAGAATTTTGGTTACGGGAGGGGCTGGATTCATTGGCTCTCACEST: gi|71860037|gb|DT009092.1|DT009092
genomic: CGAAGCCGCCACCGACGCCGTCTCCTCTGCGAAATTCTAAGTTTTTCCAGgtgaattgtg ... tggatgacagTCCAATATGAGAATTTTGGTTACGGGAGGGGCTGGATTCATTGGCTCTCAC
EST: CGAAGCCGCCACCGACGCCGTCTCCTCTGCGAAATTCTAAGTTTTTCCAG TCCAATATGAGAATTTTGGTTACGGGAGGGGCTGGATTCATTGGCTCTCACEST: gi|110703601|gb|EE080591.1|EE080591
genomic: CGAAGCCGCCACCGACGCCGTCTCCTCTGCGAAATTCTAAGTTTTTCCAGgtgaattgtg ... tggatgacagTCCAATATGAGAATTTTGGTTACGGGAGGGGCTGGATTCATTGGCTCTCAC
EST: CGAAGCCGCCACCGACGCCGTCTCCTCTGCGAAATTCTAAGTTTTTCCAG TCCAATATGAGAATTTTGGTTACGGGAGGGGCTGGATTCATTGGCTCTCACEST: gi|110702160|gb|EE080556.1|EE080556
genomic: CGAAGCCGCCACCGACGCCGTCTCCTCTGCGAAATTCTAAGTTTTTCCAGgtgaattgtg ... tggatgacagTCCAATATGAGAATTTTGGTTACGGGAGGGGCTGGATTCATTGGCTCTCAC
EST: CGAAGCCGCCACCGACGCCGTCTCCTCTGCGAAATTCTAAGTTTTTCCAG TCCAATATGAGAATTTTGGTTACGGGAGGGGCTGGATTCATTGGCTCTCACEST: gi|71863746|gb|DT012801.1|DT012801
genomic: CGAAGCCGCCACCGACGCCGTCTCCTCTGCGAAATTCTAAGTTTTTCCAGgtgaattgtg ... tggatgacagTCCAATATGAGAATTTTGGTTACGGGAGGGGCTGGATTCATTGGCTCTCAC
EST: CGAAGCCGCCACCGACGCCGTCTCCTCTGCGAAATTCTAAGTTTTTCCAG TCCAATATGAGAATTTTGGTTACGGGAGGGGCTGGATTCATTGGCTCTCACEST: gi|71859225|gb|DT008280.1|DT008280
genomic: CGAAGCCGCCACCGACGCCGTCTCCTCTGCGAAATTCTAAGTTTTTCCAGgtgaattgtg ... tggatgacagTCCAATATGAGAATTTTGGTTACGGGAGGGGCTGGATTCATTGGCTCTCAC
EST: CGAAGCCGCCACCGACGCCGTCTCCTCTGCGAAATTCTAAGTTTTTCCAG TCCAATATGAGAATTTTGGTTACGGGAGGGGCTGGATTCATTGGCTCTCACEST: gi|110357315|gb|EC920771.1|EC920771
genomic: CGAAGCCGCCACCGACGCCGTCTCCTCTGCGAAATTCTAAGTTTTTCCAGgtgaattgtg ... tggatgacagTCCAATATGAGAATTTTGGTTACGGGAGGGGCTGGATTCATTGGCTCTCAC
EST: CGAAGCCGCCACCGACGCCGTCTCCTCTGCGAAATTCTAAGTTTTTCCAG TCCAATATGAGAATTTTGGTTACGGGAGGGGCTGGATTCATTGGCTCTCACEST: gi|110723901|gb|EE099257.1|EE099257
genomic: CGAAGCCGCCACCGACGCCGTCTCCTCTGCGAAATTCTAAGTTTTTCCAGgtgaattgtg ... tggatgacagTCCAATATGAGAATTTTGGTTACGGGAGGGGCTGGATTCATTGGCTCTCAC
EST: CGAAGCCGCCACCGACGCCGTCTCCTCTGCGAAATTCTAAGTTTTTCCAG TCCAATATGAGAATTTTGGTTACGGGAGGGGCTGGATTCATTGGCTCTCACEST: gi|110721290|gb|EE098120.1|EE098120
genomic: CGAAGCCGCCACCGACGCCGTCTCCTCTGCGAAATTCTAAGTTTTTCCAGgtgaattgtg ... tggatgacagTCCAATATGAGAATTTTGGTTACGGGAGGGGCTGGATTCATTGGCTCTCAC
EST: CGAAGCCGCCACCGACGCCGTCTCCTCTGCGAAATTCTAAGTTTTTCCAG TCCAATATGAGAATTTTGGTTACGGGAGGGGCTGGATTCATTGGCTCTCACEST: gi|110727671|gb|EE104694.1|EE104694
genomic: CGAAGCCGCCACCGACGCCGTCTCCTCTGCGAAATTCTAAGTTTTTCCAGgtgaattgtg ... tggatgacagTCCAATATGAGAATTTTGGTTACGGGAGGGGCTGGATTCATTGGCTCTCAC
EST: CGAAGCCGCCACCGACGCCGTCTCCTCTGCGAAATTCTAAGTTTTTCCAG TCCAATATGAGAATTTTGGTTACGGGAGGGGCTGGATTCATTGGCTCTCACEST: gi|33407947|gb|CF213574.1|CF213574
genomic: CGAAGCCGCCACCGACGCCGTCTCCTCTGCGAAATTCTAAGTTTTTCCAGgtgaattgtg ... tggatgacagTCCAATATGAGAATTTTGGTTACGGGAGGGGCTGGATTCATTGGCTCTCAC
EST: CGAAGCCGCCACCGACGCCGTCTCCTCTGCGAAATTCTAAGTTTTTCCAG TCCAATATGAGAATTTTGGTTACGGGAGGGGCTGGATTCATTGGCTCTCACEST: gi|110692310|gb|EE071412.1|EE071412
genomic: CGAAGCCGCCACCGACGCCGTCTCCTCTGCGAAATTCTAAGTTTTTCCAGgtgaattgtg ... tggatgacagTCCAATATGAGAATTTTGGTTACGGGAGGGGCTGGATTCATTGGCTCTCAC
EST: CGAAGCCGCCACCGACGCCGTCTCCTCTGCGAAATTCTAAGTTTTTCCAG TCCAATATGAGAATTTTGGTTACGGGAGGGGCTGGATTCATTGGCTCTCACEST: gi|110356627|gb|EC919593.1|EC919593
genomic: CGAAGCCGCCACCGACGCCGTCTCCTCTGCGAAATTCTAAGTTTTTCCAGgtgaattgtg ... tggatgacagTCCAATATGAGAATTTTGGTTACGGGAGGGGCTGGATTCATTGGCTCTCAC
EST: CGAAGCCGCCACCGACGCCGTCTCCTCTGCGAAATTCTAAGTTTTTCCAG TCCAATATGAGAATTTTGGTTACGGGAGGGGCTGGATTCATTGGCTCTCACEST: gi|30299440|gb|CB976234.1|CB976234
genomic: CGAAGCCGCCACCGACGCCGTCTCCTCTGCGAAATTCTAAGTTTTTCCAGgtgaattgtg ... tggatgacagTCCAATATGAGAATTTTGGTTACGGGAGGGGCTGGATTCATTGGCTCTCAC
EST: CGAAGCCGCCACCGACGCCGTCTCCTCTGCGAAATTCTAAGTTTTTCCAG TCCAATATGAGAATTTTGGTTACGGGAGGGGCTGGATTCATTGGCTCTCACEST: gi|71860871|gb|DT009926.1|DT009926
genomic: CGAAGCCGCCACCGACGCCGTCTCCTCTGCGAAATTCTAAGTTTTTCCAGgtgaattgtg ... tggatgacagTCCAATATGAGAATTTTGGTTACGGGAGGGGCTGGATTCATTGGCTCTCAC
EST: CGAAGCCGCCACCGACGCCGTCTCCTCTGCGAAATTCTAAGTTTTTCCAG TCCAATATGAGAATTTTGGTTACGGGAGGGGCTGGATTCATTGGCTCTCAC
genomic: CGAAGCCGCCACCGACGCCGTCTCCTCTGCGAAATTCTAAGTTTTTCCAGgtgaattgtg ... tggatgacagTCCAATATGAGAATTTTGGTTACGGGAGGGGCTGGATTCATTGGCTCTCAC
gaaatagtcattgttagaattttatagtctgaaatggtttttttgtggatgacagTCCAATATGAGAATTTTGGTTACGGGAGGGGCTGGATTCATTGGCTCTCACCTTGTAGACAAATTGATGCAGAATGAGAAGAATGAG
tttttttgt CT-rich tract
attgttagaattttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctgaatttgtttatttgaagaacaaggtgtttttttcccttcctgaaatagtcattgttagaattttatagtctgaaatggtttttttgtggatgacagTCCAATATGAGAATTTTGGTTACGGGAGGGGCTGGATTCATTGGCTCTCACCTTGTAGACAAATTGATGCAGAATGAGAAGAATGAG
- - - - - - - - -gaagaac
- - - - - - - - - - - - - - - - - - -cccttcc
- - - - - - - - - - - - - - - - - - - - - - -gaaatag