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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtttctgttctgcttgatttctattttttcttatttatcatgtgggatttcatgtcaaagttttgtgcaagtagtttgacaacccttttatattttgtagCGGCCTTGTTTAGTGAAGATGGTGAGAGTTAGTGTCCTGAATGATGCTCTCAAGAGCATGTACAATGCAGAGAAGCGTGGGAAGCGACAGGTGATGATCA

Basic information

species Vitis vinifera
transcript Vv13s0019g00530.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0019g00530.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G083497_T02 (Zea mays), 3'ss of exon 1
-gtttctgttctgcttgatttctattttttcttatttatcatgtgggatttcatgtcaaagttttgtgcaagtagtttgacaacccttttatattttgtagCGGCCTTGTTTAGTGAAGATGGTGAGAGTTAGTGTCCTGAATGATGCTCTCAAGAGCATGTACAATGCAGAGAAGCGTGGGAAGCGACAGGTGATGATCA------------
   ||  ||  ||||   |   | |   |   |||||   |||       |||   ||        ||  |      | ||||   ||  || ||||     |  |  |    || |  |||||||| || ||||| || || ||||| ||||||  ||||||||||||||||||| | || ||| | ||||| |||||||            
acctttggtcgtgctacgtagatgtaaatggctatttcgaatgcta---ctcactccagcacagcatgtgatc---cttacaa---ttgcatctttt----tgttcacgcaagGTCATCATGGTGAGGGTCAGTGTGCTCAACGATGCGCTCAAGTCCATGTACAATGCAGAGAAGAGGGGCAAGAGGCAGGTCATGATCAGGCCGTCGTCCA

upper sequence: Vv13s0019g00530.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G328578_T01 (Zea mays), 3'ss of exon 1
gtttctgttctgcttgatttctattttttcttatttat-catgtggg-atttcatgtcaaagttttgtgcaagt--agtttgacaacccttt---tatattttgtagCGGCCTTGTTTAGTGAAGATGGTGAGAGTTAGTGTCCTGAATGATGCTCTCAAGAGCATGTACAATGCAGAGAAGCGTGGGAAGCGACAGGTGATGATCA-----
              |   ||   || | |   ||  || ||  |||   |||| | | | | | ||||    ||   |  ||| | || | |   | ||| |  | |      |     |  |  |||||||| || ||||| || |||||||||||||||  |||||||||||| || |||   ||||| || ||||| |||||||     
------------tgtacctttagttgtgttacataaatgcaaatggctgtttcctctgatattcttgtctgtgtccggcatgagacccttatgactgtatctctttgttcagGTAAAAGGACAGCATGGTGAGGGTCAGTGTGCTCAATGATGCTCTCAAGTCCATGTACAATGCTGAAAAGATAGGGAAACGTCAGGTCATGATCAGGCCG

upper sequence: Vv13s0019g00530.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA11G00600.2 (Glycine max), 3'ss of exon 1
gtttctgttctgcttgatttctattttttcttat-ttatcatgtgggatttcatgtcaaagtt--ttgtgcaagtagtttg--acaacccttttatattttgtagCGGCCTTGTTTAGTGAAGATGGTGAGAGTTAGTGTCCTGAATGATGCTCTCAAGAGCATGTACAATGCAGAGAAGCGTGGGAAGCGACAGGTGATGATCA----------
                ||| ||  ||| | || | | ||       | ||| | ||    | |   |||| || | ||| |  | ||  | | |||   || | |    ||    |  |||  |||||||| ||||||||  ||||||||||||| |||||||||||||| || |||||||| |||||||| ||||| ||||| |          
---------------tattcctgctttatgttgtatcatggaaaatggttttaagtagccgctgaatgtggaaatcgttcgttataattcatatatgcatttttgtttgctgtagTTTTGACAATGGTGAGGGTTAGTGTGTTGAATGATGCTCTGAAGAGCATGTACAACGCCGAGAAGCGCGGGAAGCGCCAGGTCATGATTAGGCCATCCTC

upper sequence: Vv13s0019g00530.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA11G00590.2 (Glycine max), 3'ss of exon 1
gtttctgttctgcttgatttctattttttcttat-ttatcatgtgggatttcatgtcaaagtt--ttgtgcaagtagtttg--acaacccttttatattttgtagCGGCCTTGTTTAGTGAAGATGGTGAGAGTTAGTGTCCTGAATGATGCTCTCAAGAGCATGTACAATGCAGAGAAGCGTGGGAAGCGACAGGTGATGATCA----------
                ||| ||  ||| | || | | ||       | ||| | ||      |   ||||  | | ||| |  | ||  | | |||   || | |    ||    |  |||  |||||||| ||||||||  ||||||||||||| |||||||||||||| || |||||||| |||||||| ||||| ||||| |          
---------------tattcctgctttatgttgtatcatggaaaatggttttaagtagccactgaatgtggtaattgttcgctataattcatatatgcatttttgtttgctgtagTTTTGACAATGGTGAGGGTTAGTGTGTTGAATGATGCTCTGAAGAGCATGTACAACGCCGAGAAGCGCGGGAAGCGCCAGGTCATGATTAGGCCATCCTC

upper sequence: Vv13s0019g00530.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA15G10950.1 (Glycine max), 3'ss of exon 1
gtttctgttctgcttgatttctattttttcttatttatcatgtgggattt-catgtcaaagttttgtgcaagtagtttgacaacccttttatattttgtagCGGCCTTGTTTAGTGAAGATGGTGAGAGTTAGTGTCCTGAATGATGCTCTCAAGAGCATGTACAATGCAGAGAAGCGTGGGAAGCGACAGGTGATGATCA-------------
  ||| |   |     ||    | | ||  || ||  | |  |  ||||  ||       | ||| ||  |||   | |  ||  ||| |  | |||||  |          |||||  |||||||| ||||||||  ||||||||||||| ||||||||||||||||| ||||| || |||||||| ||||| ||||| |             
--ttcagccattgaaaatggaaaatattgtttgttgtttacatttgattggcacaatcttggtttatgtcagtg--tggttaattcttctgaaatttgtgac----------agTGACAATGGTGAGGGTTAGTGTGTTGAATGATGCTCTTAAGAGCATGTACAATGCTGAGAAACGGGGGAAGCGCCAGGTCATGATTAGGCCATCCTCAAA

upper sequence: Vv13s0019g00530.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA01G45060.1 (Glycine max), 3'ss of exon 1
gtttctgttctgcttgatttctattttttcttatttatcatgtgggatttcatgtcaaagttttgtgcaagtagtttgaca-acccttttatattttgtagCGGCCTTGTTTAGTGAAGATGGTGAGAGTTAGTGTCCTGAATGATGCTCTCAAGAGCATGTACAATGCAGAGAAGCGTGGGAAGCGACAGGTGATGATCA----------
       || | |||| |||   ||| |  |     ||  | |   ||  |  || ||     |||| || | ||| |  | |    | ||||   | | |    ||    | ||||  |||||||| ||||||||  ||||||||||||| |||||||||||||| || ||||| || |||||||| || || ||||| |          
------tttattcttggttttgttttatcatggaaaattgttttaaatagccggttaa-----tgtggaaattgttcgttataattatatatacaattttgtttactgtagTTGTGACAATGGTGAGGGTTAGTGTGTTGAATGATGCTCTGAAGAGCATGTACAACGCCGAGAAACGGGGGAAGCGCCAAGTCATGATTAGGCCGTCCTC

upper sequence: Vv13s0019g00530.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA17G02200.1 (Glycine max), 3'ss of exon 1
--------gtttctgttctgcttgatttctat---tttttcttatttatcatgtgggatttcatg---tcaaagttttgtgcaagtagtttgac--aacccttttatattttgtagCGGCCTTGTTTAGTGAAGATGGTGAGAGTTAGTGTCCTGAATGATGCTCTCAAGAGCATGTACAATGCAGAGAAGCGTGGGAAGCGACAGGTGATGATCA---------
             | |||| || |||    ||   ||  |   |||     |||| |||||  |    | |      | |   | || | |||   |  |   ||  | ||||     | ||   | ||| |  |||||||| |||||||| ||||| |||||||| ||||||||||||||||| |||||  | || ||||| || || ||||| |         
gtaagattaacattattct-ctcgatcctcataaattggttccattcggagtgtgtgatttagttcacttacgccgctataataataatctgattgattctaattgaaatttgc----gtctcagTGAGTCACCATGGTGAGGGTTAGTGTGCTGAACGATGCTCTGAAGAGCATGTACAATGCTGAGAAAAGGGGAAAGCGCCAAGTCATGATTAGGCCATCCT

upper sequence: Vv13s0019g00530.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA07G38520.1 (Glycine max), 3'ss of exon 1
---------------gtttctgt-tctgcttgatttctattttttcttatt-tatcatgtgggatttcatgtcaaagttttgtgcaagtagtttgacaacccttttatattttgtagCGGCCTTGTTTAGTGAAGATGGTGAGAGTTAGTGTCCTGAATGATGCTCTCAAGAGCATGTACAATGCAGAGAAGCGTGGGAAGCGACAGGTGATGATCA---------
                | ||| | ||| | | |  |   |   |||  ||| | | || |||  |     |  | | || |    || | ||||||    |   ||  | ||||     | ||     |||||  |||||||| |||||||| ||||| |||||||| ||||||||||||||||| |||||  | || ||||| || || |||||           
gtaagattaacactattctctctctcttcataaagtggttccattcggattgtgtgatttggtttacgccgctataattata-ataaattgtttgat--tctaattgaaatttgc----gtctcagCGAGTGACCATGGTGAGGGTTAGTGTGCTGAACGATGCTCTGAAGAGCATGTACAATGCTGAGAAAAGGGGAAAGCGCCAAGTCATGATTCGGCCATCCT

upper sequence: Vv13s0019g00530.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: PP1S41_94V6.1 (Physcomitrella patens), 3'ss of exon 1
gtttctgttctgcttgatttctattttttcttatttatcatg-tgggatttcatgtcaaagttttgtgcaagtagtttgacaacccttttatattttgtagCGGCCTTGTTTAGTGAAGATGGTGAGAGTTAGTGTCCTGAATGATGCTCTCAAGAGCATGTACAATGCAGAGAAGCGTGGGAAGCGACAGGTGATGATCA--------
      |   |     |||   |   |     | |    |||     | ||||| |     |  |    | || || |  | |   |  | |   |  || | |      |  |  | |||||||||| | |||||  |||| |||||  | |||| ||||| |||||||||||||||||| ||||| || ||| |||| |        
----tagaaatttacaattgagaaggtcagagagtagctatggcttcaattcatattggcctgattcaaatgtggtattgctattgtcgtgttcatcttaacagG-----TAGGGCACGATGGTGAGAATCAGTGTGTTGAACGATGCGTTGAAGAACATGTTCAATGCAGAGAAGCGTGGAAAGCGTCAAGTGTTGATTAGGCCTTCG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37189257|gb|CF608606.1|CF608606
EST:     CTGCTTTGGAGGCGCTTCTGCAGATCTCTG                         CTGCCTTGTTTAGTGAAGATGGTGAGAGTTAGTGTCCTGAATGATGCTCTC
genomic: CTGCTTTGGAGGCGCTTCTGCAGATCTCTGgtacggaccg ... tattttgtagCGGCCTTGTTTAGTGAAGATGGTGAGAGTTAGTGTCCTGAATGATGCTCTC
EST: gi|37188644|gb|CF607993.1|CF607993
EST:     CTCCTGCTCTCTGCTTTGGAGGCGCTTCTGCAGATCTCTG                         CGGCCTTGTTTAGTGAAGATGGTGAGAGTTAGTGTCCTGAATGATGCTCTC
genomic: CTCCTGCTCTCTGCTTTGGAGGCGCTTCTGCAGATCTCTGgtacggaccg ... tattttgtagCGGCCTTGTTTAGTGAAGATGGTGAGAGTTAGTGTCCTGAATGATGCTCTC
EST: gi|110413213|gb|EC978992.1|EC978992
EST:     GCTTTGGAGGCGCTTCTGCAGATCTCTG                         CGGCCTTGTTTAGTGAAGATGGTGAGAGTTAGTGTCCTGAATGATGCTCTC
genomic: GCTTTGGAGGCGCTTCTGCAGATCTCTGgtacggaccg ... tattttgtagCGGCCTTGTTTAGTGAAGATGGTGAGAGTTAGTGTCCTGAATGATGCTCTC
EST: gi|110706416|gb|EE081925.1|EE081925
EST:     CTCCTGCTCTCTCCTTTGGAGGCGCTTCTGCAGATCTCTG                         CGGCCTTGTTTAGTGAAGATGGTGAGAGTTAGTGTCCTGAATGATG--CTC
genomic: CTCCTGCTCTCTGCTTTGGAGGCGCTTCTGCAGATCTCTGgtacggaccg ... tattttgtagCGGCCTTGTTTAGTGAAGATGGTGAGAGTTAGTGTCCTGAATGATGCTCTC
EST: gi|71889263|gb|DT038318.1|DT038318
EST:     CTGCNGATCTCTG                         CGGCCTTGTTTAGTGAAGATGGTGAGAGTTAGTGTCCTGAATGATGCTCTC
genomic: CTGCAGATCTCTGgtacggaccg ... tattttgtagCGGCCTTGTTTAGTGAAGATGGTGAGAGTTAGTGTCCTGAATGATGCTCTC
EST: gi|77583362|gb|DV220714.1|DV220714
EST:     TCTGCTTTGGAGGCGCTTCTGCAGATCTCTG                         CGGCCTTGTTTAGTGAAGATGGTGAGAGTTAGTGTCCTGAATGATGCTCTC
genomic: TCTGCTTTGGAGGCGCTTCTGCAGATCTCTGgtacggaccg ... tattttgtagCGGCCTTGTTTAGTGAAGATGGTGAGAGTTAGTGTCCTGAATGATGCTCTC
EST: gi|71867515|gb|DT016570.1|DT016570
EST:     CTCCTGCTCTCTGCTTTGGAGGCGCTTCTGCAGATCTCTG                         CGGCCTTGTTTAGTGAAGATGGTGAGAGTTAGTGTCCTGAATGATGCTCTC
genomic: CTCCTGCTCTCTGCTTTGGAGGCGCTTCTGCAGATCTCTGgtacggaccg ... tattttgtagCGGCCTTGTTTAGTGAAGATGGTGAGAGTTAGTGTCCTGAATGATGCTCTC
EST: gi|110382367|gb|EC939287.1|EC939287
EST:     CTCCTGCTCTCTGCTTTGGAGGCGCTTCTGCAGATCTCTG                         CGGCCTTGTTTAGTGAAGATGGTGAGAGTTAGTGTCCTGAATGATGCTCTC
genomic: CTCCTGCTCTCTGCTTTGGAGGCGCTTCTGCAGATCTCTGgtacggaccg ... tattttgtagCGGCCTTGTTTAGTGAAGATGGTGAGAGTTAGTGTCCTGAATGATGCTCTC
EST: gi|27584268|gb|CB006963.1|CB006963
EST:     CTCCTGCTCTCTGCTTTGGAGGCGCTTCTGCAGATCTCTG                         CTGCCTTGTTTAGTGAAGATGGTGAGAGTTAGTGTCCTGAATGATGCTCTC
genomic: CTCCTGCTCTCTGCTTTGGAGGCGCTTCTGCAGATCTCTGgtacggaccg ... tattttgtagCGGCCTTGTTTAGTGAAGATGGTGAGAGTTAGTGTCCTGAATGATGCTCTC
EST: gi|110397390|gb|EC963125.1|EC963125
EST:     GGCGCTTCTGCAGATCTCTG                         CGGCCTTGTTTAGTGAAGATGGTGAGAGTTAGTGTCCTGAATGATGCTCTC
genomic: GGCGCTTCTGCAGATCTCTGgtacggaccg ... tattttgtagCGGCCTTGTTTAGTGAAGATGGTGAGAGTTAGTGTCCTGAATGATGCTCTC
EST: gi|110716930|gb|EE092340.1|EE092340
EST:     CTCCTGCTCTCTGCTTTGGAGGCGCTTCTGCAGATCTCTG                         CGGCCTTGTTTAGTGAAGATGGTGAGAGTTAGTGTCCTGAATGATGCTCTC
genomic: CTCCTGCTCTCTGCTTTGGAGGCGCTTCTGCAGATCTCTGgtacggaccg ... tattttgtagCGGCCTTGTTTAGTGAAGATGGTGAGAGTTAGTGTCCTGAATGATGCTCTC
EST: gi|110697335|gb|EE074231.1|EE074231
EST:     CTCCTGCTCTCTGCTTTGGAGGCGCTTCTGCAGATCTCTG                         CGGCCTTGTTTAGTGAAGATGGTGAGAGTTAGTGTCCTGAATGATGCTCTC
genomic: CTCCTGCTCTCTGCTTTGGAGGCGCTTCTGCAGATCTCTGgtacggaccg ... tattttgtagCGGCCTTGTTTAGTGAAGATGGTGAGAGTTAGTGTCCTGAATGATGCTCTC
EST: gi|110694545|gb|EE071755.1|EE071755
EST:     CTGCTCTCTGCTTTGGAGGCGCTTCTGCAGATCTCTG                         CGGCCTTGTTTAGTGAAGATGGTGAGAGTTAGTGTCCTGAATGATGCTCTC
genomic: CTGCTCTCTGCTTTGGAGGCGCTTCTGCAGATCTCTGgtacggaccg ... tattttgtagCGGCCTTGTTTAGTGAAGATGGTGAGAGTTAGTGTCCTGAATGATGCTCTC
EST: gi|71867475|gb|DT016530.1|DT016530
EST:     GCGCTTCTGCAGATCTCTG                         CGGCCTTGTTTAGTGAAGATGGTGAGAGTTAGTGTCCTGAATGATGCTCTC
genomic: GCGCTTCTGCAGATCTCTGgtacggaccg ... tattttgtagCGGCCTTGTTTAGTGAAGATGGTGAGAGTTAGTGTCCTGAATGATGCTCTC
EST: gi|110396918|gb|EC962625.1|EC962625
EST:     CTGCTTTGGAGGCGCTTCTGCAGATCTCTG                         CGGCCTTGTTTAGTGAAGATGGTGAGAGTTAGTGTCCTGAATGATGCTCTC
genomic: CTGCTTTGGAGGCGCTTCTGCAGATCTCTGgtacggaccg ... tattttgtagCGGCCTTGTTTAGTGAAGATGGTGAGAGTTAGTGTCCTGAATGATGCTCTC
EST: gi|110407526|gb|EC973128.1|EC973128
EST:     TGCTTTGGAGGCGCTTCTGCAGATCTCTG                         CGGCCTTGTTTAGTGAAGATGGTGAGAGTTAGTGTCCTGAATGATGCTCTC
genomic: TGCTTTGGAGGCGCTTCTGCAGATCTCTGgtacggaccg ... tattttgtagCGGCCTTGTTTAGTGAAGATGGTGAGAGTTAGTGTCCTGAATGATGCTCTC
EST: gi|110700964|gb|EE078077.1|EE078077
EST:     CTCCTGCTCTCTGCTTTGGAGGCGCTTCTGCAGATCTCTG                         CGGCCTTGTTTAGTGAAGATGGTGAGAGTTAGTGTCCTGAATGATGCTCTC
genomic: CTCCTGCTCTCTGCTTTGGAGGCGCTTCTGCAGATCTCTGgtacggaccg ... tattttgtagCGGCCTTGTTTAGTGAAGATGGTGAGAGTTAGTGTCCTGAATGATGCTCTC
EST: gi|110702677|gb|EE078855.1|EE078855
EST:     CTCCTGCTCTCTGCTTTGGAGGCGCTTCTGCAGATCTCTG                         CGGCCTTGTTTAGTGAAGATGGTGAGAGTTAGTGTCCTGAATGATGCTCTC
genomic: CTCCTGCTCTCTGCTTTGGAGGCGCTTCTGCAGATCTCTGgtacggaccg ... tattttgtagCGGCCTTGTTTAGTGAAGATGGTGAGAGTTAGTGTCCTGAATGATGCTCTC
EST: gi|110688679|gb|EE067503.1|EE067503
EST:     CTCCTGCTCTCTGCTTTGGAGGCGCTTCTGCAGATCTCTG                         CGGCCTTGTTTAGTGAAGATGGCGAGAGTTAGTGTCCTGAATGATGCTCTC
genomic: CTCCTGCTCTCTGCTTTGGAGGCGCTTCTGCAGATCTCTGgtacggaccg ... tattttgtagCGGCCTTGTTTAGTGAAGATGGTGAGAGTTAGTGTCCTGAATGATGCTCTC
EST: gi|351024589|gb|FQ433004.1|FQ433004
EST:     CTCCTGCTCTCTGCTTTGGAGGCGCTTCTGCAGATCTCTG                         CTGCCTTGTTTAGTGAAGATGGTGAGAGTTAGTGTCCTGAATGATGCTCTC
genomic: CTCCTGCTCTCTGCTTTGGAGGCGCTTCTGCAGATCTCTGgtacggaccg ... tattttgtagCGGCCTTGTTTAGTGAAGATGGTGAGAGTTAGTGTCCTGAATGATGCTCTC
EST: gi|110707337|gb|EE083651.1|EE083651
EST:     CTCTCTGCTTTGGAGGCGCTTCTGCAGATCTCTG                         CGGCCTTGTTTAGTGAAGATGGTGAGAGTTAGTGTCCTGAATGATGCTCTC
genomic: CTCTCTGCTTTGGAGGCGCTTCTGCAGATCTCTGgtacggaccg ... tattttgtagCGGCCTTGTTTAGTGAAGATGGTGAGAGTTAGTGTCCTGAATGATGCTCTC
EST: gi|110377409|gb|EC942471.1|EC942471
EST:     CTCCTGCTCTCTGCTTTGGAGGCGCTTCTGCAGATCTCTG                         CGGCCTTGTTTAGTGAAGATGGTGAGAGTTAGTGTCCTGAATGATGCTCTC
genomic: CTCCTGCTCTCTGCTTTGGAGGCGCTTCTGCAGATCTCTGgtacggaccg ... tattttgtagCGGCCTTGTTTAGTGAAGATGGTGAGAGTTAGTGTCCTGAATGATGCTCTC
EST: gi|110391160|gb|EC956117.1|EC956117
EST:     CTCCTGCTCTCTGCTTTGGAGGCGCTTCTGCAGATCTCTG                         CGGCCTTGTTTAGTGAAGATGGTGAGAGTTAGTGTCCTGAATGATGCTCTC
genomic: CTCCTGCTCTCTGCTTTGGAGGCGCTTCTGCAGATCTCTGgtacggaccg ... tattttgtagCGGCCTTGTTTAGTGAAGATGGTGAGAGTTAGTGTCCTGAATGATGCTCTC
EST: gi|71873421|gb|DT022476.1|DT022476
EST:     CTCCTGCTCTCTGCTTTGGAGGCGCTTCTGCAGATCTCTG                         CGGCCTTGTTTAGTGAAGATGGTGAGAGTTAGTGTCCTGAATGATGCTCTC
genomic: CTCCTGCTCTCTGCTTTGGAGGCGCTTCTGCAGATCTCTGgtacggaccg ... tattttgtagCGGCCTTGTTTAGTGAAGATGGTGAGAGTTAGTGTCCTGAATGATGCTCTC
EST: gi|110696211|gb|EE075108.1|EE075108
EST:     CTCCTGCTCTCTGCTTTGGAGGCGCTTCTGCAGATCTCTG                         CGGCCTTGTTTAGTGAAGATGGTGAGAGTTAGTGTCCTGAATGATGCTCTC
genomic: CTCCTGCTCTCTGCTTTGGAGGCGCTTCTGCAGATCTCTGgtacggaccg ... tattttgtagCGGCCTTGTTTAGTGAAGATGGTGAGAGTTAGTGTCCTGAATGATGCTCTC
EST: gi|34415895|gb|CF414649.1|CF414649
EST:     CCTGCTCTCTGCTTTGGAGGCGCTTCTGCAGATCTCTG                         CGGCCTTGTTTAGTGAAGATGGTGAGAGTTAGTGTCCTGAATGATGCTCTC
genomic: CCTGCTCTCTGCTTTGGAGGCGCTTCTGCAGATCTCTGgtacggaccg ... tattttgtagCGGCCTTGTTTAGTGAAGATGGTGAGAGTTAGTGTCCTGAATGATGCTCTC
EST: gi|71870073|gb|DT019128.1|DT019128
EST:     CTCCTGCTCTCTGCTTTGGAGGCGCTTCTGCAGATCTCTG                         CGGCCTTGTTTAGTGAAGATGGTGAGAGTTAGTGTCCTGAATGATGCTCTC
genomic: CTCCTGCTCTCTGCTTTGGAGGCGCTTCTGCAGATCTCTGgtacggaccg ... tattttgtagCGGCCTTGTTTAGTGAAGATGGTGAGAGTTAGTGTCCTGAATGATGCTCTC
EST: gi|30138003|gb|CB923341.1|CB923341
EST:     CTCCTGCTCTCTGCTTTGGAGGCGCTTCTGCAGATCTCTG                         CTGCCTTGTTTAGTGAAGATGGTGAGAGTTAGTGTCCTGAATGATGCTCTC
genomic: CTCCTGCTCTCTGCTTTGGAGGCGCTTCTGCAGATCTCTGgtacggaccg ... tattttgtagCGGCCTTGTTTAGTGAAGATGGTGAGAGTTAGTGTCCTGAATGATGCTCTC
EST: gi|110374713|gb|EC939636.1|EC939636
EST:     CTCCTGCTCTCTGCTTTGGAGGCGCTTCTGCAGATCTCTG                         CGGCCTTGTTTAGTGAAGATGGTGAGAGTTAGTGTCCTGAATGATGCTCTC
genomic: CTCCTGCTCTCTGCTTTGGAGGCGCTTCTGCAGATCTCTGgtacggaccg ... tattttgtagCGGCCTTGTTTAGTGAAGATGGTGAGAGTTAGTGTCCTGAATGATGCTCTC
EST: gi|27585355|gb|CB008050.1|CB008050
EST:     CTCCTGCTCTCTGCTTTGGAGGCGCTTCTGCAGATCTCTG                         CTGCCTTGTTTAGTGAAGATGGTGAGAGTTAGTGTCCTGAATGATGCTCTC
genomic: CTCCTGCTCTCTGCTTTGGAGGCGCTTCTGCAGATCTCTGgtacggaccg ... tattttgtagCGGCCTTGTTTAGTGAAGATGGTGAGAGTTAGTGTCCTGAATGATGCTCTC
EST: gi|110724530|gb|EE100438.1|EE100438
EST:     CTCCTGCTCTCTGCTTTGGAGGCGCTTCTGCAGATCTCTG                         CGGCCTTGTTTAGTGAAGATGGTGAGAGTTAGTGTCCTGAATGATGCTCTC
genomic: CTCCTGCTCTCTGCTTTGGAGGCGCTTCTGCAGATCTCTGgtacggaccg ... tattttgtagCGGCCTTGTTTAGTGAAGATGGTGAGAGTTAGTGTCCTGAATGATGCTCTC
EST: gi|87585766|gb|DY474350.1|DY474350
EST:     CCTGCTCTCTGCTTTGGAGGCGCTTCTGCAGATCTCTG                         CGGCCTTGTTTAGTGAAGATGGTGAGAGTTAGTGTCCTGAATGATGCTCTC
genomic: CCTGCTCTCTGCTTTGGAGGCGCTTCTGCAGATCTCTGgtacggaccg ... tattttgtagCGGCCTTGTTTAGTGAAGATGGTGAGAGTTAGTGTCCTGAATGATGCTCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatttcatgtcaaagttttgtgcaagtagtttgacaacccttttatattttgtagCGGCCTTGTTTAGTGAAGATGGTGAGAGTTAGTGTCCTGAATGATGCTCTCAAGAGCATGTACAATGCAGAGAAGCGTGGGAAGCGACAGGTGATGATCA
                            gtttgac  putative branch site (score: 4)
                                     cccttttatatttt  putative PPT
                                        ttttatattttgta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtttctgttctgcttgatttctattttttcttatttatcatgtgggatttcatgtcaaagttttgtgcaagtagtttgacaacccttttatattttgtagCGGCCTTGTTTAGTGAAGATGGTGAGAGTTAGTGTCCTGAATGATGCTCTCAAGAGCATGTACAATGCAGAGAAGCGTGGGAAGCGACAGGTGATGATCA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - tgcttga
- - - - - - - - - - - - - - - - - - - catgtgg
- - - - - - - - - - - - - - - - - - - - - - - - -tcatgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcaagta