Sequence
atgc intronic sequence ATGC exonic sequence...gtttcttaattcagatatggtgacatggaaattatgtggttacatgaattttattattccttccctctttaatatttcattgatgacttatttgattcagGTTCTGAGGCAATGTTTGCAGATCTTTGCTACTTTCCAGTAAGATCAGTGCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv12s0142g00170.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA08G19120.1 (Glycine max), 3'ss of exon 6
gtttcttaattcagatatggtgacatggaaat-tatgtggttacatgaattttattattccttccctctttaat--atttcattgatgacttatt--tgattcagGTTCTGAGGCAATGTTTGCAGATCTTTGCTACTTTCCAGTAAGATCAGTGCAG
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-----ttaatgtgataaaattgcaatacaaatgtaactattgatggaatatgcacaacctattcaactattaattgacataaatactgactgtttcatattgcagGTTCTGAGGCCATGTTTGCAGATCTTTGCTACTTTTCTGTACGTTCAGTTCAG
upper sequence: Vv12s0142g00170.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA15G05880.1 (Glycine max), 3'ss of exon 5
gtttcttaattcagatatggtgacatggaaattat-gtggttacatgaattttattattccttccctctttaatattt-cattgatgacttatttgattcagGTTCTGAGGCAATGTTTGCAGATCTTTGCTACTTTCCAGTAAGATCAGTGCAG
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ttaatgtgataaaattgcaatacaaatgtaactatagttgggatatgcacaac-ctattcaactattaattgacgtaaatactgattgttt-catgttgcagGTTCTGAAGCCATGTTTGCAGATCTTTGCTACTTTTCTGTACGCTCAGTTCAG
upper sequence: Vv12s0142g00170.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA05G24530.1 (Glycine max), 3'ss of exon 5
gtttcttaattcagatatggtgacatggaaattatgtggttacatgaattttattattccttccctctttaatatttcattgatgacttatt-tgattcagGTTCTGAGGCAATGTTTGCAGATCTTTGCTACTTTCCAGTAAGATCAGTGCAG
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-tattgtaatgtggtgaatatgcaatttgcatttaggtattgctagcagttataaatttttttgaactgctgattaacattgttactgggccatgttacagGCTCTGAGGCTATGTTTGCAGATCTTTGCTATTTCTCTGTACAATCAGTTCAG
upper sequence: Vv12s0142g00170.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA08G07720.1 (Glycine max), 3'ss of exon 3
gtttcttaattcagatatggtgacatggaaattatgtggttacatgaattttattattccttccctctttaatatttcattgatgacttatt-tgattcagGTTCTGAGGCAATGTTTGCAGATCTTTGCTACTTTCCAGTAAGATCAGTGCAG
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atattgtaatgtggtgaatatgcaatttgcatttaggtattgc-tggcacgtacaatttttttgaactgctgattaacattgttactggatcctgttacagGCTCTGAGGCTATGTTTGCAGATCTTTGCTATTTCTCTGTACGATCAGTTCAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gaattttattattccttccctctttaatatttcattgatgacttatttgattcagGTTCTGAGGCAATGTTTGCAGATCTTTGCTACTTTCCAGTAAGATCAGTGCAG
cttattt CT-rich tract
tttaatatttcattga TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtttcttaattcagatatggtgacatggaaattatgtggttacatgaattttattattccttccctctttaatatttcattgatgacttatttgattcagGTTCTGAGGCAATGTTTGCAGATCTTTGCTACTTTCCAGTAAGATCAGTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - -catggaa
- - - - - - - - - - - - - - - - - - - - -acatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatgac