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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacatataactctctctctctatctctttgatttttcacagctttgggctagtttgatggcttcatgctcttaaagatcttagaaagtataatgggggttttgttcatttatcgaaattacaagttcattgatttgtttagGTGATGAAAAAGCTCATAATCACATTCCAATGGCTTGTAAAGACTCAGTAGCAATCCTGTACATGTTTGATCTTACTAGCAGGTGTACCTTGAATAG

Basic information

species Vitis vinifera
transcript Vv12s0059g02280.t01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26265133|gb|CA816196.1|CA816196
EST:     TCTTTATGTTGGAGGTGCAAGGATTTCTTATAGTATCTGGGAAGTAGGAG                         GTGATGAAAAAGCTCATAATCACATTCCAATGGCTTGTAAAGACTCAGTAG
genomic: TCTTTATGTTGGAGGTGCAAGGATTTCTTATAGTATCTGGGAAGTAGGAGgtacatataa ... atttgtttagGTGATGAAAAAGCTCATAATCACATTCCAATGGCTTGTAAAGACTCAGTAG
EST: gi|110383289|gb|EC947654.1|EC947654
EST:     TCTTTATGTTGGAGGTGCAAGGATTTCTTATAGTATCTGGGAAGTAGGAG                         GTGATGAAAAAGCTCATAATCACATTCCAATGGCTTGTAAAGACTCAGTAG
genomic: TCTTTATGTTGGAGGTGCAAGGATTTCTTATAGTATCTGGGAAGTAGGAGgtacatataa ... atttgtttagGTGATGAAAAAGCTCATAATCACATTCCAATGGCTTGTAAAGACTCAGTAG
EST: gi|34544942|gb|CF513174.1|CF513174
EST:     TCTTTATGTTGGAGGTGCAAGGATTTCTTATAGTATCTGGGAAGTAGGAG                         GTGATGAAAAAGCTCATAATCACATTCCAATGGCTTGTAAAGACTCAGTAG
genomic: TCTTTATGTTGGAGGTGCAAGGATTTCTTATAGTATCTGGGAAGTAGGAGgtacatataa ... atttgtttagGTGATGAAAAAGCTCATAATCACATTCCAATGGCTTGTAAAGACTCAGTAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtataatgggggttttgttcatttatcgaaattacaagttcattgatttgtttagGTGATGAAAAAGCTCATAATCACATTCCAATGGCTTGTAAAGACTCAGTAGCAATCCTGTACATGTTTGATCTTACTAGCAGGTGTACCTTGAATAG
                                        cattgat  putative branch site (score: 4)
                                              tttgttt  CT-rich tract
            ttttgttcatttat  TA-rich tract