Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctttaggtttgctatatggaatagttggcatgatacaatctgtaaaaacatgtccaccctagcttttttaataattcactatttaaattattttcttcagAACTCTTACTGACAACATGGTGGTGGGAGTATCTAAAGGATTTGAAAAGAGACTTCAATTAGTTGGTGTTGGGTATCGTGCAACGGTTGAAGGAAAAGAC

Basic information

species Vitis vinifera
transcript Vv12s0059g02250.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0059g02250.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA09G25500.1 (Glycine max), 3'ss of exon 2
---ctttaggtttgctatatggaatagttgg--catgatacaatctgtaaaaacatgtccaccctagcttttttaataattcactatttaaattattttcttcagAACTCTTACTGACAACATGGTGGTGGGAGTATCTAAAGGATTTGAAAAGAGACTTCAATTAGTTGGTGTTGGGTATCGTGCAACGGTTGAAGGAAAAGAC
       |  || | |  ||  ||   |     |    || | |   |     ||| | ||  || |  | |    |  ||     || |||| | | |  |||| || ||||| |||||| ||||| | |||||||||||||| |||||||||| ||||||| | ||||||||||| |||||||| | ||| |||||||| || 
gcatcacaatttagattcataaaaacatcaaatctaactatatttcatttgtccatattcattcttgactctcatgtggtt-----ttcaaataaatgttatcagGACCCTTACAGACAACCTGGTGATTGGAGTATCTAAAGGTTTTGAAAAGAAACTTCAACTTGTTGGTGTTGGTTATCGTGCTATGGTAGAAGGAAACGAA

upper sequence: Vv12s0059g02250.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA16G31250.1 (Glycine max), 3'ss of exon 2
-cttta-ggtttgctatatggaatagttggcat---gatacaatctgtaaaaacatgtccaccctagcttttttaataattcactatttaaattattttcttcagAACTCTTACTGACAACATGGTGGTGGGAGTATCTAAAGGATTTGAAAAGAGACTTCAATTAGTTGGTGTTGGGTATCGTGCAACGGTTGAAGGAAAAGAC
 ||| |   ||||   |    ||||  ||  ||     || | |   |       | | ||  || |  | |    |  ||  |     |||| | | |  |||| || ||||| |||||| ||||| | |||||||||||||| ||||| |||| ||||||| | ||||||||||| |||||||| | ||| |||||||| || 
gcttcacaatttggattcataaatatatgaaatctaattatatttcatttgtctgtattcatacttgactctcatgtggtttgc-----aaataaatgttatcagGACACTTACAGACAACCTGGTGATTGGAGTATCTAAAGGTTTTGACAAGAAACTTCAACTTGTTGGTGTTGGTTATCGTGCTATGGTAGAAGGAAACGAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351040641|gb|FQ438185.1|FQ438185
EST:     AAAAAGGCATTTGAAACTAGAAGAGCTAACCAAATGCATGGTTTATTCAG                         AACTCTTACTGACAACATGGTGGTGGGAGTATCTAAAGGATTTGAAAAGAG
genomic: AAAAAGGCATTTGAAACTAGAAGAGCTAACCAAATGCATGGTTTATTCAGgtgaactcat ... ttttcttcagAACTCTTACTGACAACATGGTGGTGGGAGTATCTAAAGGATTTGAAAAGAG
EST: gi|351015440|gb|FQ447269.1|FQ447269
EST:     AAAAAGGCATTTGAAACTAGAAGAGCTAACCAAATGCATGGTTTATTCAG                         AACTCTTACTGACAACATGGTGGTGGGAGTATCTAAAGGATTTGAAAAGAG
genomic: AAAAAGGCATTTGAAACTAGAAGAGCTAACCAAATGCATGGTTTATTCAGgtgaactcat ... ttttcttcagAACTCTTACTGACAACATGGTGGTGGGAGTATCTAAAGGATTTGAAAAGAG
EST: gi|349830999|gb|FQ418283.1|FQ418283
EST:     AAAAAGGCATTTGAAACTAGAAGAGCTAACCAAATGCATGGTTTATTCAG                         AACTCTTACTGACAACATGGTGGTGGGAGTATCTAAAGGATTTGAAAAGAG
genomic: AAAAAGGCATTTGAAACTAGAAGAGCTAACCAAATGCATGGTTTATTCAGgtgaactcat ... ttttcttcagAACTCTTACTGACAACATGGTGGTGGGAGTATCTAAAGGATTTGAAAAGAG
EST: gi|351015658|gb|FQ427143.1|FQ427143
EST:     AAAAAGGCATTTGAAACTAGAAGAGCTAACCAAATGCATGGTTTATTCAG                         AACTCTTACTGACAACATGGTGGTGGGAGTATCTAAAGGATTTGAAAAGAG
genomic: AAAAAGGCATTTGAAACTAGAAGAGCTAACCAAATGCATGGTTTATTCAGgtgaactcat ... ttttcttcagAACTCTTACTGACAACATGGTGGTGGGAGTATCTAAAGGATTTGAAAAGAG
EST: gi|71872343|gb|DT021398.1|DT021398
EST:     AAAAAGGCATTTGAAACTAGAAGAGCTAACCAAATGCATGGTTTATTCAG                         AACTCTTACTGACAACATGGTGGTGGGAGTATCTAAAGGATTTGAAAAGAG
genomic: AAAAAGGCATTTGAAACTAGAAGAGCTAACCAAATGCATGGTTTATTCAGgtgaactcat ... ttttcttcagAACTCTTACTGACAACATGGTGGTGGGAGTATCTAAAGGATTTGAAAAGAG
EST: gi|351049501|gb|FQ429123.1|FQ429123
EST:     AAAAAGGCATTTGAAACTAGAAGAGCTAACCAAATGCATGGTTTATTCAG                         AACTCTTACTGACAACATGGTGGTGGGAGTATCTAAAGGATTTGAAAAGAG
genomic: AAAAAGGCATTTGAAACTAGAAGAGCTAACCAAATGCATGGTTTATTCAGgtgaactcat ... ttttcttcagAACTCTTACTGACAACATGGTGGTGGGAGTATCTAAAGGATTTGAAAAGAG
EST: gi|349813872|gb|FQ414106.1|FQ414106
EST:     AAAAAGGCATTTGAAACTAGAAGAGCTAGCCAAATGCATGGTTTATTCAG                         AACTCTTACTGACAACATGGTGGTGGGAGTATCTAAAGGATTTGAAAAGAG
genomic: AAAAAGGCATTTGAAACTAGAAGAGCTAACCAAATGCATGGTTTATTCAGgtgaactcat ... ttttcttcagAACTCTTACTGACAACATGGTGGTGGGAGTATCTAAAGGATTTGAAAAGAG
EST: gi|351041239|gb|FQ444216.1|FQ444216
EST:     AAAAAGGCATTTGAAACTAGAAGAGCTAACCAAATGCATGGTTTATTCAG                         AACTCTTACTGACAACATGGTGGTGGGAGTATCTAAAGGATTTGAAAAGAG
genomic: AAAAAGGCATTTGAAACTAGAAGAGCTAACCAAATGCATGGTTTATTCAGgtgaactcat ... ttttcttcagAACTCTTACTGACAACATGGTGGTGGGAGTATCTAAAGGATTTGAAAAGAG
EST: gi|351049566|gb|FQ429188.1|FQ429188
EST:     AAAAAGGCATTTGAAACTAGAAGAGCTAACCAAATGCATGGTTTATTCAG                         AACTCTTACTGACAACATGGTGGTGGGAGTATCTAAAGGATTTGAAAAGAG
genomic: AAAAAGGCATTTGAAACTAGAAGAGCTAACCAAATGCATGGTTTATTCAGgtgaactcat ... ttttcttcagAACTCTTACTGACAACATGGTGGTGGGAGTATCTAAAGGATTTGAAAAGAG
EST: gi|351026730|gb|FQ436383.1|FQ436383
EST:     AAAAAGGCATTTGAAACTAGAAGAGCTAACCAAATGCATGGTTTATTCAG                         AACTCTTACTGACAACATGGTGGTGGGAGTATCTAAAGGATTTGAAAAGAG
genomic: AAAAAGGCATTTGAAACTAGAAGAGCTAACCAAATGCATGGTTTATTCAGgtgaactcat ... ttttcttcagAACTCTTACTGACAACATGGTGGTGGGAGTATCTAAAGGATTTGAAAAGAG
EST: gi|110702089|gb|EE080405.1|EE080405
EST:     AAAAAGGCATTTGAAACTAGAAGAGCTAACCAAATGCATGGTTTATTCAA                         AACTCTTACTGACAACATGGTGGTGGGAGTATCTAAAGGATTTGAAAAGAG
genomic: AAAAAGGCATTTGAAACTAGAAGAGCTAACCAAATGCATGGTTTATTCAGgtgaactcat ... ttttcttcagAACTCTTACTGACAACATGGTGGTGGGAGTATCTAAAGGATTTGAAAAGAG
EST: gi|71877417|gb|DT026472.1|DT026472
EST:     AAAAAGGCATTTGAAACTAGAAGAGCTAACCAAATGCATGGTTTATTCAG                         AACTCTTACTGACAACATGGTGGTGGGAGTATCTAAAGGATTTGAAAAGAG
genomic: AAAAAGGCATTTGAAACTAGAAGAGCTAACCAAATGCATGGTTTATTCAGgtgaactcat ... ttttcttcagAACTCTTACTGACAACATGGTGGTGGGAGTATCTAAAGGATTTGAAAAGAG
EST: gi|351053699|gb|FQ440209.1|FQ440209
EST:     AAAAAGGCATTTGAAACTGGAAGAGCTAACCAAATGCATGGTTTATTCAG                         AACTCTTACTGACAACATGGTGGTGGGAGTATCTAAAGGATTTGAAAAGAG
genomic: AAAAAGGCATTTGAAACTAGAAGAGCTAACCAAATGCATGGTTTATTCAGgtgaactcat ... ttttcttcagAACTCTTACTGACAACATGGTGGTGGGAGTATCTAAAGGATTTGAAAAGAG
EST: gi|34415224|gb|CF413978.1|CF413978
EST:     AAAAAGCCATTTGAAACTAGAAGAGCTAACCAAATGCATGGTTTATTCAG                         AACTCTTACTGACAACATGGTGGTGGGAGTATCTAAAGGATTTGAAAAGAG
genomic: AAAAAGGCATTTGAAACTAGAAGAGCTAACCAAATGCATGGTTTATTCAGgtgaactcat ... ttttcttcagAACTCTTACTGACAACATGGTGGTGGGAGTATCTAAAGGATTTGAAAAGAG
EST: gi|87584092|gb|DY473380.1|DY473380
EST:     AAAAAGGCATTTGAAACTAGAAGAGCTAACCAAATGCATGGTTTATTCAG                         AACTCTTACTGACAACATGGTGGTGGGAGTATCTAAAGGATTTGAAAAGAG
genomic: AAAAAGGCATTTGAAACTAGAAGAGCTAACCAAATGCATGGTTTATTCAGgtgaactcat ... ttttcttcagAACTCTTACTGACAACATGGTGGTGGGAGTATCTAAAGGATTTGAAAAGAG
EST: gi|349820372|gb|FQ403988.1|FQ403988
EST:     AAAAAGGCATTTGAAACTAGAAGAGCTAACCAAATGCATGGTTTATTCAG                         AACTCTTACTGACAACATGGTGGTGGGAGTATCTAAAGGATTTGAAAAGAG
genomic: AAAAAGGCATTTGAAACTAGAAGAGCTAACCAAATGCATGGTTTATTCAGgtgaactcat ... ttttcttcagAACTCTTACTGACAACATGGTGGTGGGAGTATCTAAAGGATTTGAAAAGAG
EST: gi|351016847|gb|FQ424274.1|FQ424274
EST:     AAAAAGGCATTTGAAACTAGAAGAGCTAACCAAATGCATGGTTTATTCAG                         AACTCTTACTGACAACATGGTGGTGGGAGTATCTAAAGGATTTGAAAAGAG
genomic: AAAAAGGCATTTGAAACTAGAAGAGCTAACCAAATGCATGGTTTATTCAGgtgaactcat ... ttttcttcagAACTCTTACTGACAACATGGTGGTGGGAGTATCTAAAGGATTTGAAAAGAG
EST: gi|351035806|gb|FQ463651.1|FQ463651
EST:     AAAAAGGCATTTGAAACTAGAAGAGCTAACCAAATGCATGGTTTATTCAG                         AACTCTTACTGACAACATGGTGGTGGGAGTATCTAAAGGATTTGAAAAGAG
genomic: AAAAAGGCATTTGAAACTAGAAGAGCTAACCAAATGCATGGTTTATTCAGgtgaactcat ... ttttcttcagAACTCTTACTGACAACATGGTGGTGGGAGTATCTAAAGGATTTGAAAAGAG
EST: gi|349824200|gb|FQ417587.1|FQ417587
EST:     AAAAAGGCATTTGAAACTAGAAGAGCTAACCAAATGCATGGTTTATTCAG                         AACTCTTACTGACAACATGGTGGTGGGAGTATCTAAAGGATTTGAAAAGAG
genomic: AAAAAGGCATTTGAAACTAGAAGAGCTAACCAAATGCATGGTTTATTCAGgtgaactcat ... ttttcttcagAACTCTTACTGACAACATGGTGGTGGGAGTATCTAAAGGATTTGAAAAGAG
EST: gi|352794426|gb|FQ481657.1|FQ481657
EST:     AAAAAGGCATTTGAAACTAGAAGAGCTAACCAAATGCATGGTTTATTCAG                         AACTCTTACTGACAACATGGTGGTGGGAGTATCTAAAGGATTTGAAAAGAG
genomic: AAAAAGGCATTTGAAACTAGAAGAGCTAACCAAATGCATGGTTTATTCAGgtgaactcat ... ttttcttcagAACTCTTACTGACAACATGGTGGTGGGAGTATCTAAAGGATTTGAAAAGAG
EST: gi|349832341|gb|FQ420902.1|FQ420902
EST:     AAAAAGGCATTTGAAACTAGAAGAGCTAACCAAATGCATGGTTTATTCAG                         AACTCTTACTGACAACATGGTGGTGGGAGTATCTAAAGGATTTGAAAAGAG
genomic: AAAAAGGCATTTGAAACTAGAAGAGCTAACCAAATGCATGGTTTATTCAGgtgaactcat ... ttttcttcagAACTCTTACTGACAACATGGTGGTGGGAGTATCTAAAGGATTTGAAAAGAG
EST: gi|77580505|gb|DV219147.1|DV219147
EST:     AAAAAGGCATTTGAAACTAGAAGAGCTAACCAAATGCATGGTTTATTCAG                         AACTCTTACTGACAACATGGTGGTGGGAGTATCTAAAGGATTTGAAAAGAG
genomic: AAAAAGGCATTTGAAACTAGAAGAGCTAACCAAATGCATGGTTTATTCAGgtgaactcat ... ttttcttcagAACTCTTACTGACAACATGGTGGTGGGAGTATCTAAAGGATTTGAAAAGAG
EST: gi|351014840|gb|FQ438040.1|FQ438040
EST:     AAAAAGGCATTTGAAACTAGAAGAGCTAACCAAATGCATGGTTTATTCAG                         AACTCTTACTGACAACATGGTGGTGGGAGTATCTAAAGGATTTGAAAAGAG
genomic: AAAAAGGCATTTGAAACTAGAAGAGCTAACCAAATGCATGGTTTATTCAGgtgaactcat ... ttttcttcagAACTCTTACTGACAACATGGTGGTGGGAGTATCTAAAGGATTTGAAAAGAG
EST: gi|351015918|gb|FQ431873.1|FQ431873
EST:     AAAAAGGCATTTGAAACTAGAAGAGCTAACCAAATGCATGGTTTATTCAG                         AACTCTTACTGACAACATGGTGGTGGGAGTATCTAAAGGATTTGAAAAGAG
genomic: AAAAAGGCATTTGAAACTAGAAGAGCTAACCAAATGCATGGTTTATTCAGgtgaactcat ... ttttcttcagAACTCTTACTGACAACATGGTGGTGGGAGTATCTAAAGGATTTGAAAAGAG
EST: gi|351013041|gb|FQ433768.1|FQ433768
EST:     AAAAAGGCATTTGAAACTAGAAGAGCTAACCAAATGCATGGTTTATTCAG                         AACTCTTACTGACAACATGGTGGTGGGAGTATCTAAAGGATTTGAAAAGAG
genomic: AAAAAGGCATTTGAAACTAGAAGAGCTAACCAAATGCATGGTTTATTCAGgtgaactcat ... ttttcttcagAACTCTTACTGACAACATGGTGGTGGGAGTATCTAAAGGATTTGAAAAGAG
EST: gi|77584098|gb|DV221088.1|DV221088
EST:     AAAAAGGCATTTGAAACTAGAAGAGCTAACCAAATGCATGGTTTATTCAG                         AACTCTTACTGACAACATGGTGGTGGGAGTATCTAAAGGATTTGAAAAGAG
genomic: AAAAAGGCATTTGAAACTAGAAGAGCTAACCAAATGCATGGTTTATTCAGgtgaactcat ... ttttcttcagAACTCTTACTGACAACATGGTGGTGGGAGTATCTAAAGGATTTGAAAAGAG
EST: gi|351030575|gb|FQ437001.1|FQ437001
EST:     AAAAAGGCATTTGAAACTAGAAGAGCTAACCAAATGCATGGTTTATTCAG                         AACTCTTACTGACAACATGGTGGTGGGAGTATCTAAAGGATTTGAAAAGAG
genomic: AAAAAGGCATTTGAAACTAGAAGAGCTAACCAAATGCATGGTTTATTCAGgtgaactcat ... ttttcttcagAACTCTTACTGACAACATGGTGGTGGGAGTATCTAAAGGATTTGAAAAGAG
EST: gi|349828248|gb|FQ416201.1|FQ416201
EST:     AAAAAGGCATTTGAAACTAGAAGAGCTAACCAAATGCATGGTTTATTCAG                         AACTCTTACTGACAACATGGTGGTGGGAGTATCTAAAGGATTTGAAAAGAG
genomic: AAAAAGGCATTTGAAACTAGAAGAGCTAACCAAATGCATGGTTTATTCAGgtgaactcat ... ttttcttcagAACTCTTACTGACAACATGGTGGTGGGAGTATCTAAAGGATTTGAAAAGAG
EST: gi|351023474|gb|FQ432857.1|FQ432857
EST:     AAAAAGGCATTTGAAACTAGAAGAGCTAACCAAATGCATGGTTTATTCAG                         AACTCTTACTGACAACATGGTGGTGGGAGTATCTAAAGGATTTGAAAAGAG
genomic: AAAAAGGCATTTGAAACTAGAAGAGCTAACCAAATGCATGGTTTATTCAGgtgaactcat ... ttttcttcagAACTCTTACTGACAACATGGTGGTGGGAGTATCTAAAGGATTTGAAAAGAG
EST: gi|349829434|gb|FQ419966.1|FQ419966
EST:     AAAAAGGCATTTGAAACTAGAAGAGCTAACCAAATGCATGGTTTATTCAG                         AACCCTTACTGACAACATGGTGGTGGGAGTATCTAAAGGATTTGAAAAGAG
genomic: AAAAAGGCATTTGAAACTAGAAGAGCTAACCAAATGCATGGTTTATTCAGgtgaactcat ... ttttcttcagAACTCTTACTGACAACATGGTGGTGGGAGTATCTAAAGGATTTGAAAAGAG
EST: gi|349826335|gb|FQ416140.1|FQ416140
EST:     AAAAAGGCATTTGAAACTAGAAGAGCTAACCAAATGCATGGTTTATTCAG                         AACTCTTACTGACAACATGGTGGTGGGAGTATCTAAAGGATTTGAAAAGAG
genomic: AAAAAGGCATTTGAAACTAGAAGAGCTAACCAAATGCATGGTTTATTCAGgtgaactcat ... ttttcttcagAACTCTTACTGACAACATGGTGGTGGGAGTATCTAAAGGATTTGAAAAGAG
EST: gi|349812947|gb|FQ411187.1|FQ411187
EST:     AAAAAGGCATTTGAAACTAGAAGAGCTAACCAAATGCATGGTTTATTCAG                         AACTCTTACTGACAACATGGTGGTGGGAGTATCTAAAGGATTTGAAAAGAG
genomic: AAAAAGGCATTTGAAACTAGAAGAGCTAACCAAATGCATGGTTTATTCAGgtgaactcat ... ttttcttcagAACTCTTACTGACAACATGGTGGTGGGAGTATCTAAAGGATTTGAAAAGAG
EST: gi|351026249|gb|FQ428261.1|FQ428261
EST:     AAAAAGGCATTTGAAACTAGAAGAGCTAACCAAATGCATGGTTTATTCAG                         AACTCTTACTGACAACATGGTGGTGGGAGTATCTAAAGGATTTGAAAAGAG
genomic: AAAAAGGCATTTGAAACTAGAAGAGCTAACCAAATGCATGGTTTATTCAGgtgaactcat ... ttttcttcagAACTCTTACTGACAACATGGTGGTGGGAGTATCTAAAGGATTTGAAAAGAG
EST: gi|352786333|gb|FQ478942.1|FQ478942
EST:     AAAAAGGCATTTGAAACTAGAAGAGCTAACCAAATGCATGGTTTATTCAG                         AACTCTTACTGACAACATGGTGGTGGGAGTATCTAAAGGATTTGAAAAGAG
genomic: AAAAAGGCATTTGAAACTAGAAGAGCTAACCAAATGCATGGTTTATTCAGgtgaactcat ... ttttcttcagAACTCTTACTGACAACATGGTGGTGGGAGTATCTAAAGGATTTGAAAAGAG
EST: gi|351014703|gb|FQ437903.1|FQ437903
EST:     AAAAAGGCATTTGAAACTAGAAGAGCTAACCAAATGCATGGTTTATTCAG                         AACTCTTACTGACAACATGGTGGTGGGAGTATCTAAAGGATTTGAAAAGAG
genomic: AAAAAGGCATTTGAAACTAGAAGAGCTAACCAAATGCATGGTTTATTCAGgtgaactcat ... ttttcttcagAACTCTTACTGACAACATGGTGGTGGGAGTATCTAAAGGATTTGAAAAGAG
EST: gi|349814569|gb|FQ399209.1|FQ399209
EST:     AAAAAGGCATTTGAAACTAGAAGAGCTAACCAAATGCATGGTTTATTCAG                         AACTCTTACTGACAACATGGTGGTGGGAGTATCTAAAGGATTTGAAAAGAG
genomic: AAAAAGGCATTTGAAACTAGAAGAGCTAACCAAATGCATGGTTTATTCAGgtgaactcat ... ttttcttcagAACTCTTACTGACAACATGGTGGTGGGAGTATCTAAAGGATTTGAAAAGAG
EST: gi|351026917|gb|FQ436570.1|FQ436570
EST:     AAAAAGGCATTTGAAACTAGAAGAGCTAACCAAATGCATGGTTTATTCAG                         AACTCTTACTGACAACATGGTGGTGGGAGTATCTAAAGGATTTGAAAAGAG
genomic: AAAAAGGCATTTGAAACTAGAAGAGCTAACCAAATGCATGGTTTATTCAGgtgaactcat ... ttttcttcagAACTCTTACTGACAACATGGTGGTGGGAGTATCTAAAGGATTTGAAAAGAG
EST: gi|71870605|gb|DT019660.1|DT019660
EST:     AAAAAGGCATTTGAAACTAGAAGAGCTAACCAAATGCATGGTTTATTCAG                         AACTCTTACTGACAACATGGTGGTGGGAGTATCTAAAGGATTTGAAAAGAG
genomic: AAAAAGGCATTTGAAACTAGAAGAGCTAACCAAATGCATGGTTTATTCAGgtgaactcat ... ttttcttcagAACTCTTACTGACAACATGGTGGTGGGAGTATCTAAAGGATTTGAAAAGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaacatgtccaccctagcttttttaataattcactatttaaattattttcttcagAACTCTTACTGACAACATGGTGGTGGGAGTATCTAAAGGATTTGAAAAGAGACTTCAATTAGTTGGTGTTGGGTATCGTGCAACGGTTGAAGGAAAAGAC
                    ttttaat  putative branch site (score: 3)
                                          ttattttcttc  putative PPT
              tagcttttttaataat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ctttaggtttgctatatggaatagttggcatgatacaatctgtaaaaacatgtccaccctagcttttttaataattcactatttaaattattttcttcagAACTCTTACTGACAACATGGTGGTGGGAGTATCTAAAGGATTTGAAAAGAGACTTCAATTAGTTGGTGTTGGGTATCGTGCAACGGTTGAAGGAAAAGAC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAA
- - - - - - - - - - -tagttgg
- - - - - - - - - - - - - - - -gatacaa
- - - - - - - - - - - - - - - - - - - - - -aaaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - -ccaccct