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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattaaacaatatcttcttactatttctacttcaaaatatgcttctgggtgtgtgtgatttccttcacagatgtaattacttgccttctgattttcttttctcccacgaatcatgcagGAAAGTTATGAAGGACTTTGCTTTGAAACTTGAGAAACTAGCAGAGGAACTCCTGGACTTGCTGTGTGAGAATCTTGGACTGGAAAAAGGTTACCTGAAA

Basic information

species Vitis vinifera
transcript Vv12s0059g01380.t01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351026123|gb|FQ428135.1|FQ428135
EST:     CTACCTGTCTCAAACATCTCTGATTTCCCAGACCTCGACGAGGAATACAA                         GAAAGTTATGAAGGACTTTGCTTTGAAACTTGAGAAACTAGCAGAGGAACT
genomic: CTACCTGTCTCAAACGTCTCTGATTTCCCAGACCTCGACGAGGAATACAGgtaattaaac ... aatcatgcagGAAAGTTATGAAGGACTTTGCTTTGAAACTTGAGAAACTAGCAGAGGAACT
EST: gi|161716106|gb|FC068055.1|FC068055
EST:     CTACCTGTCTCAAACATCTCTGATTTCCCAGACCTCGACGAGGAATACAA                         GAAAGTTATGAAGGACTTTGCTTTGAAACTTGAGAAACTAGCAGAGGAACT
genomic: CTACCTGTCTCAAACGTCTCTGATTTCCCAGACCTCGACGAGGAATACAGgtaattaaac ... aatcatgcagGAAAGTTATGAAGGACTTTGCTTTGAAACTTGAGAAACTAGCAGAGGAACT
EST: gi|30252772|gb|CB970323.1|CB970323
EST:     CTACCTGTCTCAAACATCTCTGATTTCCCAGACCTCGACGAGGAATACAA                         GAAAGTTATGAAGGACTTTGCTTTGAAACTCGAGAAACTAGCAGAGGAACT
genomic: CTACCTGTCTCAAACGTCTCTGATTTCCCAGACCTCGACGAGGAATACAGgtaattaaac ... aatcatgcagGAAAGTTATGAAGGACTTTGCTTTGAAACTTGAGAAACTAGCAGAGGAACT
EST: gi|32268302|gb|CD717461.1|CD717461
EST:     CTACCTGTCTCAAACGTCTCTGATTTCCCAGACCTCGACGAGGAATACAG                         GAAAGTTATGAAGGACTTTGCTTTGAAACTTGAGAAACTAGCAGAGGAACT
genomic: CTACCTGTCTCAAACGTCTCTGATTTCCCAGACCTCGACGAGGAATACAGgtaattaaac ... aatcatgcagGAAAGTTATGAAGGACTTTGCTTTGAAACTTGAGAAACTAGCAGAGGAACT
EST: gi|110727761|gb|EE104888.1|EE104888
EST:     CTACCTGTCTCAAACATCTCTGATTTCCCAGACCTCGACGAGGAATACAA                         GAAAGTTATGAAGGACTTTGCTTTGAAACTTGAGAAACTAGCAGAGGAACT
genomic: CTACCTGTCTCAAACGTCTCTGATTTCCCAGACCTCGACGAGGAATACAGgtaattaaac ... aatcatgcagGAAAGTTATGAAGGACTTTGCTTTGAAACTTGAGAAACTAGCAGAGGAACT
EST: gi|351054949|gb|FQ440288.1|FQ440288
EST:     CTACCTGTCTCAAACGTCTCTGATTTCCCAGACCTCGACGAGGAATACAG                         GAAAGTTATGAAGGACTTTGCTTTGAAACTTGAGAAACTAGCGGAGGAACT
genomic: CTACCTGTCTCAAACGTCTCTGATTTCCCAGACCTCGACGAGGAATACAGgtaattaaac ... aatcatgcagGAAAGTTATGAAGGACTTTGCTTTGAAACTTGAGAAACTAGCAGAGGAACT
EST: gi|77583863|gb|DV220968.1|DV220968
EST:     CTACCTGTCTCAAACGTCTCTGATTTCCCAGACCTCGACGAGGAATACAG                         GAAAGTTATGAAGGACTTTGCTTTGAAACTTGAGAAACTAGCAGAGGAACT
genomic: CTACCTGTCTCAAACGTCTCTGATTTCCCAGACCTCGACGAGGAATACAGgtaattaaac ... aatcatgcagGAAAGTTATGAAGGACTTTGCTTTGAAACTTGAGAAACTAGCAGAGGAACT
EST: gi|32270249|gb|CD719408.1|CD719408
EST:     CTACCTGTCTCAAACGTCTCTGATTTCCCAGACCTCGACGAGGAATACAG                         GAAAGTTATGAAGGACTTTGCTTTGAAACTTGAGAAACTAGCAGAGGAACT
genomic: CTACCTGTCTCAAACGTCTCTGATTTCCCAGACCTCGACGAGGAATACAGgtaattaaac ... aatcatgcagGAAAGTTATGAAGGACTTTGCTTTGAAACTTGAGAAACTAGCAGAGGAACT
EST: gi|351022691|gb|FQ428600.1|FQ428600
EST:     CTACCTGTCTCAAACGTCTCTGATTTCCCAGACCTCGACGAGGAATACAG                         GAAAGTTATGAAGGACTTTGCTTTGAAACTTGAGAAACTAGCAGAGGAACT
genomic: CTACCTGTCTCAAACGTCTCTGATTTCCCAGACCTCGACGAGGAATACAGgtaattaaac ... aatcatgcagGAAAGTTATGAAGGACTTTGCTTTGAAACTTGAGAAACTAGCAGAGGAACT
EST: gi|32248786|gb|CD714605.1|CD714605
EST:     CTACCTGTCTCAAACGTCTCTGATTTCCCAGACCTCGACGAGGAATACAG                         GAAAGTTATGAAGGACTTTGCTTTGAAACTTGAGAAACTAGCAGAGGAACT
genomic: CTACCTGTCTCAAACGTCTCTGATTTCCCAGACCTCGACGAGGAATACAGgtaattaaac ... aatcatgcagGAAAGTTATGAAGGACTTTGCTTTGAAACTTGAGAAACTAGCAGAGGAACT
EST: gi|161714036|gb|FC064111.1|FC064111
EST:     CTACCTGTCTCAAACGTCTCTGATTTCCCAGACCTCGACGAGGAATACAG                         GAAAGTTATGAAGGACTTTGCTTTGAAACTTGAGAAACTAGCAGAGGAACT
genomic: CTACCTGTCTCAAACGTCTCTGATTTCCCAGACCTCGACGAGGAATACAGgtaattaaac ... aatcatgcagGAAAGTTATGAAGGACTTTGCTTTGAAACTTGAGAAACTAGCAGAGGAACT
EST: gi|349832706|gb|FQ422064.1|FQ422064
EST:     CTACCTGTCTCAAACATCTCTGATTTCCCAGACCTCGACGAGGAATACAA                         GAAAGTTATGAAGGACTTTGCTTTGAAACTTGAGAAACTAGCAGAGGAACT
genomic: CTACCTGTCTCAAACGTCTCTGATTTCCCAGACCTCGACGAGGAATACAGgtaattaaac ... aatcatgcagGAAAGTTATGAAGGACTTTGCTTTGAAACTTGAGAAACTAGCAGAGGAACT
EST: gi|32268560|gb|CD717719.1|CD717719
EST:     CTACCTGTCTCAAACGTCTCTGATTTCCCAGACCTCGACGAGGAATACAG                         GAAAGTTATGAAGGACTTTGCTTTGAAACTTGAGAAACTAGCAGAGGAACT
genomic: CTACCTGTCTCAAACGTCTCTGATTTCCCAGACCTCGACGAGGAATACAGgtaattaaac ... aatcatgcagGAAAGTTATGAAGGACTTTGCTTTGAAACTTGAGAAACTAGCAGAGGAACT
EST: gi|161714262|gb|FC064159.1|FC064159
EST:     CTACCTGTCTCAAACATCTCTGATTTCCCAGACCTCGACGAGGAATACAA                         GAAAGTTATGAAGGACTTTGCTTTGAAACTTGAGAAACTAGCAGAGGAACT
genomic: CTACCTGTCTCAAACGTCTCTGATTTCCCAGACCTCGACGAGGAATACAGgtaattaaac ... aatcatgcagGAAAGTTATGAAGGACTTTGCTTTGAAACTTGAGAAACTAGCAGAGGAACT
EST: gi|161718648|gb|FC068224.1|FC068224
EST:     CTACCTGTCTCAAACGTCTCTGATTTCCCAGACCTCGACGAGGAATACAG                         GAAAGTTATGAAGGACTTTGCTTTGAAACTTGAGAAACTAGCAGAGGAACT
genomic: CTACCTGTCTCAAACGTCTCTGATTTCCCAGACCTCGACGAGGAATACAGgtaattaaac ... aatcatgcagGAAAGTTATGAAGGACTTTGCTTTGAAACTTGAGAAACTAGCAGAGGAACT
EST: gi|30256251|gb|CB972094.1|CB972094
EST:     CTACCTGTCTCAAACATCTCCGATTTCCCAGACCTCGACGAGGAATACAA                         GAAAGTTATGAAGGACTTTGCTTTGAAACTTGAGAAACTAGCAGAGGAACT
genomic: CTACCTGTCTCAAACGTCTCTGATTTCCCAGACCTCGACGAGGAATACAGgtaattaaac ... aatcatgcagGAAAGTTATGAAGGACTTTGCTTTGAAACTTGAGAAACTAGCAGAGGAACT
EST: gi|110700838|gb|EE077845.1|EE077845
EST:     CTACCTGTCTCAAACGTCTCTGATTTCCCAGACCTCGACGAGGAATACAG                         GAAAGTTATGAAGGACTTTGCTTTGAAACTTGAGAAACTAGCAGAGGAACT
genomic: CTACCTGTCTCAAACGTCTCTGATTTCCCAGACCTCGACGAGGAATACAGgtaattaaac ... aatcatgcagGAAAGTTATGAAGGACTTTGCTTTGAAACTTGAGAAACTAGCAGAGGAACT
EST: gi|161707767|gb|FC056432.1|FC056432
EST:     CTACCTGTCTCAAACATCTCTGATTTCCCAGACCTCGACGAGGAATACAA                         GAAAGTTATGAAGGACTTTGCTTTGAAACTTGAGAAACTAGCAGAGGAACT
genomic: CTACCTGTCTCAAACGTCTCTGATTTCCCAGACCTCGACGAGGAATACAGgtaattaaac ... aatcatgcagGAAAGTTATGAAGGACTTTGCTTTGAAACTTGAGAAACTAGCAGAGGAACT
EST: gi|110688626|gb|EE067394.1|EE067394
EST:     CTACCTGTCTCAAACGTCTCTGATTTCCCAGACCTCGACGAGGAATACAG                         GAAAGTTATGAAGGACTTTGCTTTGAAACTTGAGAAACTAGCAGAGGAACT
genomic: CTACCTGTCTCAAACGTCTCTGATTTCCCAGACCTCGACGAGGAATACAGgtaattaaac ... aatcatgcagGAAAGTTATGAAGGACTTTGCTTTGAAACTTGAGAAACTAGCAGAGGAACT
EST: gi|351055645|gb|FQ452110.1|FQ452110
EST:     CTACCTGTCTCAAACGTCTCTGATTTCCCAGACCTCGACGAGGAATACAG                         AAAAGTTATGAAGGACTTTGCTTTGAAACTTGAGAAACTAGCGGAGGAACT
genomic: CTACCTGTCTCAAACGTCTCTGATTTCCCAGACCTCGACGAGGAATACAGgtaattaaac ... aatcatgcagGAAAGTTATGAAGGACTTTGCTTTGAAACTTGAGAAACTAGCAGAGGAACT
EST: gi|161720595|gb|FC069917.1|FC069917
EST:     CTACCTGTCTCAAACGTCTCTGATTTCCCAGACCTCGACGAGGAATACAG                         GAAAGTTATGAAGGACTTTGCTTTGAAACTTGAGAAACTAGCAGAGGAACT
genomic: CTACCTGTCTCAAACGTCTCTGATTTCCCAGACCTCGACGAGGAATACAGgtaattaaac ... aatcatgcagGAAAGTTATGAAGGACTTTGCTTTGAAACTTGAGAAACTAGCAGAGGAACT
EST: gi|161713229|gb|FC063069.1|FC063069
EST:     CTACCTGTCTCAAACATCTCTGATTTCCCAGACCTCGACGAGGAATACAA                         GAAAGTTATGAAGGACTTTGCTTTGAAACTTGAGAAACTAGCAGAGGAACT
genomic: CTACCTGTCTCAAACGTCTCTGATTTCCCAGACCTCGACGAGGAATACAGgtaattaaac ... aatcatgcagGAAAGTTATGAAGGACTTTGCTTTGAAACTTGAGAAACTAGCAGAGGAACT
EST: gi|161719282|gb|FC064822.1|FC064822
EST:     CTACCTGTCTCAAACATCTCTGATTTCCCAGACCTCGACGAGGAATACAA                         GAAAGTTATGAAGGACTTTGCTTTGAAACTTGAGAAACTAGCAGAGGAACT
genomic: CTACCTGTCTCAAACGTCTCTGATTTCCCAGACCTCGACGAGGAATACAGgtaattaaac ... aatcatgcagGAAAGTTATGAAGGACTTTGCTTTGAAACTTGAGAAACTAGCAGAGGAACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcacagatgtaattacttgccttctgattttcttttctcccacgaatcatgcagGAAAGTTATGAAGGACTTTGCTTTGAAACTTGAGAAACTAGCAGAGGAACTCCTGGACTTGCTGTGTGAGAATCTTGGACTGGAAAAAGGTTACCTGAAA
                      ttctgat  putative branch site (score: 3)
                           attttctttt  TA-rich tract