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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagggttttgatttgtgggctttaactaggcagagttgaatttgatttgaactttttttagttttgaattgctctttttcctggtaacaatctgtttggttgatttggtggtagATTATCTACAAGAGTGCACAACGGGAAGCACCATGTATGGATTCAAGGGGGGCCCTGCTGGGATCATGAATTGCAAATATGTTGAGTTGACATCGGAGTT

Basic information

species Vitis vinifera
transcript Vv12s0059g01220.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0059g01220.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G059151_T01 (Zea mays), 3'ss of exon 2
gtgagggttttgatttgtgggct-ttaactaggcagagttgaatttgatttgaactttttttagttttgaattgctctttttcctggtaacaatctgtttggttgatttggtggtagATTATCTACAAGAGTGCACAACGGGAAGCACCATGTATGGATTCAAGGGGGGCCCTGCTGGGATCATGAATTGCAAATATGTTGAGTTGACATCGGAGTT
             ||||    |  || | ||| ||| |    | ||     |   |        |  ||||    |  || || | |    | | ||||||||     | |    ||| |||||||| ||| |  |||  || |||||| |||||||||| ||||| ||||| |||||||||||||| ||||| ||||| ||  | || || || ||
-------------tttgcatacaattgagtagacagtgaaagagtttgacggttttgaaggctttcctgaaacaattattgtctttg----actttgtttggtgtgcgttggatcagACTATCTACAGGAGCGTGCAAAAGGCAGCACCTTGTATGGATTTAAGGGAGGCCCAGCTGGGATCATGAAGTGCAAGTATGTAGAACTCACTTCAGACTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|294964929|gb|GW838732.1|GW838732
EST:     GTCAGGAGGACAGGCACCGGGAGGGCACAATGTGATTTCAGGGATCTTTG                         ATTATCTACAAGAGTGCTCAACGGGAAGCACCATGTATGGATTCAAGGGGG
genomic: GTCAGGAGGACAGGCACCGGGAGGGCACAATGTGATTTCAGGGATCTTTGgtgagggttt ... ttggtggtagATTATCTACAAGAGTGCACAACGGGAAGCACCATGTATGGATTCAAGGGGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agttttgaattgctctttttcctggtaacaatctgtttggttgatttggtggtagATTATCTACAAGAGTGCACAACGGGAAGCACCATGTATGGATTCAAGGGGGGCCCTGCTGGGATCATGAATTGCAAATATGTTGAGTTGACATCGGAGTT
             tcttttt  TA-rich tract