Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtctctctcacatttcattaagttgatttcatttattgtaattctttattttataatcgttgtctgattccatctgactgggtgcctttagTTGCAGCAGAAGTTTGTGAAGCGTGACTCTAAGGACATTATTGGGGAAGTTCATAAAACTCATCATGCTATACA

Basic information

species Vitis vinifera
transcript Vv12s0059g00640.t01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110711717|gb|EE088518.1|EE088518
EST:     TAGAAGCTGAAAAGTTGAAGCTAGTTTCCGAGGGTTGTGATCCAAAAACT                         TTGCAGCAGAAGTTTGTGAAGCGTGACTCTAAAGACATTATTGGGGAAGTT
genomic: TAGAAGCTGAAAAGTTGAAGCTAGTTTCCGAGGGTTGTGATCCAAAAACTgtgagtctct ... gtgcctttagTTGCAGCAGAAGTTTGTGAAGCGTGACTCTAAGGACATTATTGGGGAAGTT
EST: gi|37183584|gb|CF602938.1|CF602938
EST:     TAGAAGCTGAAAAGTTGAAGCTAGTTTCCGAGGGTTGTGATCCAAAAACT                         TTGCAGCAGAAGTTTGTGAAGCGTGACTCTAAGGACATTATTGGGGAAGTT
genomic: TAGAAGCTGAAAAGTTGAAGCTAGTTTCCGAGGGTTGTGATCCAAAAACTgtgagtctct ... gtgcctttagTTGCAGCAGAAGTTTGTGAAGCGTGACTCTAAGGACATTATTGGGGAAGTT
EST: gi|110367432|gb|EC931364.1|EC931364
EST:     TAGAAGCTGAAAAGTTGAAGCTAGTTTCCGAGGGTTGTGATCCAAAAACT                         TTGCAGCAGAAGTTTGTGAAGCGTGACTCTAAGGACATTATTGGGGAAGTT
genomic: TAGAAGCTGAAAAGTTGAAGCTAGTTTCCGAGGGTTGTGATCCAAAAACTgtgagtctct ... gtgcctttagTTGCAGCAGAAGTTTGTGAAGCGTGACTCTAAGGACATTATTGGGGAAGTT
EST: gi|110723286|gb|EE100428.1|EE100428
EST:     TAGAAGCTGAAAAGTTGAAGCTAGTTTCTGAGGGTTGTGATCCAAAAACT                         TTGCAGCAGAAGTTTGTGAAGCGTGACTCTAAGGACATTATTGGGGAAGTT
genomic: TAGAAGCTGAAAAGTTGAAGCTAGTTTCCGAGGGTTGTGATCCAAAAACTgtgagtctct ... gtgcctttagTTGCAGCAGAAGTTTGTGAAGCGTGACTCTAAGGACATTATTGGGGAAGTT
EST: gi|110693148|gb|EE069126.1|EE069126
EST:     TAGAAGCTGAAAAGTTGAAGCTAGTTTCCGAGGGTTGTGATCCAAAAACT                         TTGCAGCAGAAGTTTGTGAAGCGTTACTCTAAGGACATTATTGGGGAAGTT
genomic: TAGAAGCTGAAAAGTTGAAGCTAGTTTCCGAGGGTTGTGATCCAAAAACTgtgagtctct ... gtgcctttagTTGCAGCAGAAGTTTGTGAAGCGTGACTCTAAGGACATTATTGGGGAAGTT
EST: gi|37183645|gb|CF602999.1|CF602999
EST:     TAGAAGCTGAAAAGTTGAAGCTAGTTTCCGAGGGTTGTGATCCAAAAACT                         TTGCAGCAGAAGTTTGTGAAGCGTGACTCTAAGGACATTATTGGGGAAAGT
genomic: TAGAAGCTGAAAAGTTGAAGCTAGTTTCCGAGGGTTGTGATCCAAAAACTgtgagtctct ... gtgcctttagTTGCAGCAGAAGTTTGTGAAGCGTGACTCTAAGGACATTATTGGGGAA-GT
EST: gi|110698839|gb|EE076793.1|EE076793
EST:     TAGAAGCTGAAAAGTTGAAGCTAGTTTCCGAGGGTTGTGATCCAAAAACT                         TTGCAGCAGAAGTTTGTGAAGCGTGACTCTAAGGACATTATTGGGGAAGTT
genomic: TAGAAGCTGAAAAGTTGAAGCTAGTTTCCGAGGGTTGTGATCCAAAAACTgtgagtctct ... gtgcctttagTTGCAGCAGAAGTTTGTGAAGCGTGACTCTAAGGACATTATTGGGGAAGTT
EST: gi|110720685|gb|EE096823.1|EE096823
EST:     TAGAAGCTGAAAAGTTGAAGCTAGTTTCTGAGGGTTGTGATCCAAAAACT                         TTGCAGCAGAAGTTTGTGAAGCGTGACTCTAAGGACATTATTGGGGAAGTT
genomic: TAGAAGCTGAAAAGTTGAAGCTAGTTTCCGAGGGTTGTGATCCAAAAACTgtgagtctct ... gtgcctttagTTGCAGCAGAAGTTTGTGAAGCGTGACTCTAAGGACATTATTGGGGAAGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtaattctttattttataatcgttgtctgattccatctgactgggtgcctttagTTGCAGCAGAAGTTTGTGAAGCGTGACTCTAAGGACATTATTGGGGAAGTTCATAAAACTCATCATGCTATACA
                                   atctgac  putative branch site (score: 3)
                                              tgccttt  putative PPT
     ttctttattttataat  TA-rich tract