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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttctctttctctgtttctcaaaccttttgttatttgtttttttgtgatgtattttgacgtgcgccctctaatgcccttgaattttgcttttcagTTGAAAGAGAGAAAGCCTCTCGGTATGCTGAAGAAAGCTCTTGAGAATGCCCCTCCCAATAGAGATTTCATTGCGGCTCTTAGGGCTTCCAATCTCCGGA

Basic information

species Vitis vinifera
transcript Vv12s0057g01240.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0057g01240.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA02G42680.1 (Glycine max), 3'ss of exon 2
--gttctctttctctgtttctcaaaccttttgttatttgtttttttgtgatgtattttgacgtgcgccctctaatgccctt----gaattttgc--ttttcagTTGAAAGAGAGAAAGCCTCTCGGTATGCTGAAGAAAGCTCTTGAGAATGCCCCTCCCAATAGAGATTTCATTGCGGCTCTTAGGGCTTCCAATCTCCGGA
   || |  ||   | | |       || ||||| ||| | | | |||  | | ||   ||        |  ||||   |     | | | ||   ||||||| | ||||| ||||| || |||||| |||||||||||||||| || ||||| |||||   ||| ||||| ||||  ||||| | |||  ||||    || |
gtattgtgattgattttcttggtgctctattgttctttatatatatgtttttttttccaaccaaatagattgaatgtattactggggactgtgtgattttcagCTTAAAGAAAGAAAACCCCTCGGTGTGCTGAAGAAAGCTCTCGAAAATGCACCTCCTGCTAGGGATTTTATTGGTGCTCTAAAGGCAGCCAACGAACGAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351046192|gb|FQ442570.1|FQ442570
EST:     GTAACATTTTGGAAGAAATTGTATGGAACAAGGACAAGGAAGTCTCACAG                         TTGAAAGAGAGAAAGCCTCTCGGTATGCTGAAGAAAGCTCTTGAGAATGCC
genomic: GTAACATTTTGGAAGAAATTGTATGGAACAAGGACAAGGAAGTCTCACAGgttctctttc ... tgcttttcagTTGAAAGAGAGAAAGCCTCTCGGTATGCTGAAGAAAGCTCTTGAGAATGCC
EST: gi|351031552|gb|FQ459809.1|FQ459809
EST:     GTAACATTTTGGAAGAAATTGTATGGAACAAGGACAAGGAAGTCTCACAG                         TTGAAAGAGAGAAAGCCTCTCGGTATGCTGAAGAAAGCTCTTGAGAACGCC
genomic: GTAACATTTTGGAAGAAATTGTATGGAACAAGGACAAGGAAGTCTCACAGgttctctttc ... tgcttttcagTTGAAAGAGAGAAAGCCTCTCGGTATGCTGAAGAAAGCTCTTGAGAATGCC
EST: gi|351031792|gb|FQ460049.1|FQ460049
EST:     GTAACATTTTGGAAGAAATTGTATGGAACAAGGACAAGGAAGTCTCACAG                         TTGAAAGAGAGAAAGCCTCTCGGTATGCTGAAGAAAGCTCTTGAGAATGCC
genomic: GTAACATTTTGGAAGAAATTGTATGGAACAAGGACAAGGAAGTCTCACAGgttctctttc ... tgcttttcagTTGAAAGAGAGAAAGCCTCTCGGTATGCTGAAGAAAGCTCTTGAGAATGCC
EST: gi|351035408|gb|FQ459675.1|FQ459675
EST:     GTAACATTTTGGAAGAAATTGTATGGAACAAGGACAAGGAAGTCTCACAG                         TTGAAAGAGAGAAAGCCTCTCGGTATGCTGAAGAAAGCTCTTGAGAATGCC
genomic: GTAACATTTTGGAAGAAATTGTATGGAACAAGGACAAGGAAGTCTCACAGgttctctttc ... tgcttttcagTTGAAAGAGAGAAAGCCTCTCGGTATGCTGAAGAAAGCTCTTGAGAATGCC
EST: gi|351033918|gb|FQ462973.1|FQ462973
EST:     GTAACATTTTGGAAGAAATTGTATGGAACAAGGACAAGGAAGTCTCACAG                         TTGAAAGAGAGAAAGCCTCTCGGTATGCTGAAGAAAGCTCTTGAGAACGCC
genomic: GTAACATTTTGGAAGAAATTGTATGGAACAAGGACAAGGAAGTCTCACAGgttctctttc ... tgcttttcagTTGAAAGAGAGAAAGCCTCTCGGTATGCTGAAGAAAGCTCTTGAGAATGCC
EST: gi|349820151|gb|FQ404873.1|FQ404873
EST:     GTAACATTTTGGAGGAAATTGTATGGAACAAGGACAAGGAAGTCTCACAG                         TTGAAAGAGAGAAAGCCTCTCGGTATGCTGAAGAAAGCTCTTGAGAATGCC
genomic: GTAACATTTTGGAAGAAATTGTATGGAACAAGGACAAGGAAGTCTCACAGgttctctttc ... tgcttttcagTTGAAAGAGAGAAAGCCTCTCGGTATGCTGAAGAAAGCTCTTGAGAATGCC
EST: gi|349822807|gb|FQ398194.1|FQ398194
EST:     GTAACATTTTGGAAGAAATTGTATGGAACAAGGACAAGGAAGTCTCACAG                         TTGAAAGAGAGAAAGCCTCTCGGTATGCTGAAGAAAGCTCTTGAGAATGCC
genomic: GTAACATTTTGGAAGAAATTGTATGGAACAAGGACAAGGAAGTCTCACAGgttctctttc ... tgcttttcagTTGAAAGAGAGAAAGCCTCTCGGTATGCTGAAGAAAGCTCTTGAGAATGCC
EST: gi|351038829|gb|FQ448472.1|FQ448472
EST:     GTAACATTTTGGAAGAAATTGTATGGAACAAGGACAAGGAAGTCTCACAG                         TTGAAAGAGAGAAAGCCTCTCGGTATGCTGAAGAAAGCTCTTGAGAATGCC
genomic: GTAACATTTTGGAAGAAATTGTATGGAACAAGGACAAGGAAGTCTCACAGgttctctttc ... tgcttttcagTTGAAAGAGAGAAAGCCTCTCGGTATGCTGAAGAAAGCTCTTGAGAATGCC
EST: gi|351034477|gb|FQ463290.1|FQ463290
EST:     GTAACATTTTGGAAGAAATTGTATGGAACAAGGACAAGGAAGTCTCACAG                         TTGAAAGAGAGAAAGCCTCTCGGTATGCTGAAGAAAGCTCTTGAGAATGCC
genomic: GTAACATTTTGGAAGAAATTGTATGGAACAAGGACAAGGAAGTCTCACAGgttctctttc ... tgcttttcagTTGAAAGAGAGAAAGCCTCTCGGTATGCTGAAGAAAGCTCTTGAGAATGCC
EST: gi|349821059|gb|FQ404312.1|FQ404312
EST:     GTAACATTTTGGAAGAAATTGTATGGAACAAGGACAAGGAAGTCTCACAG                         TTGAAAGAGAGAAAGCCTCTCGGTATGCTGAAGAAAGCTCTTGAGAATGCC
genomic: GTAACATTTTGGAAGAAATTGTATGGAACAAGGACAAGGAAGTCTCACAGgttctctttc ... tgcttttcagTTGAAAGAGAGAAAGCCTCTCGGTATGCTGAAGAAAGCTCTTGAGAATGCC
EST: gi|351039889|gb|FQ464927.1|FQ464927
EST:     GTAACATTTTGGAAGAAATTGTATGGAACAAGGACAAGGAAGTCTCACAG                         TTGAAAGAGAGAAAGCCTCTCGGTATGCTGAAGAAAGCTCTTGAGAATGCC
genomic: GTAACATTTTGGAAGAAATTGTATGGAACAAGGACAAGGAAGTCTCACAGgttctctttc ... tgcttttcagTTGAAAGAGAGAAAGCCTCTCGGTATGCTGAAGAAAGCTCTTGAGAATGCC
EST: gi|110687718|gb|EE065446.1|EE065446
EST:     GTAACATTTTGGAAGAAATTGTATGGAACAAGGACAAGGAAGTCTCACAG                         TTGAAAGAGAGAAAGCCTCTCGGTATGCTGAAGAAAGCTCTTGAGAATGCC
genomic: GTAACATTTTGGAAGAAATTGTATGGAACAAGGACAAGGAAGTCTCACAGgttctctttc ... tgcttttcagTTGAAAGAGAGAAAGCCTCTCGGTATGCTGAAGAAAGCTCTTGAGAATGCC
EST: gi|349810716|gb|FQ402959.1|FQ402959
EST:     GTAACATTTTGGAAGAAATTGTATGGAACAAGGACAAGGAAGTCTCACAG                         TTGAAAGAGAGAAAGCCTCTCGGTATGCTGAAGAAAGCTCTTGAGAATGCC
genomic: GTAACATTTTGGAAGAAATTGTATGGAACAAGGACAAGGAAGTCTCACAGgttctctttc ... tgcttttcagTTGAAAGAGAGAAAGCCTCTCGGTATGCTGAAGAAAGCTCTTGAGAATGCC
EST: gi|351048498|gb|FQ448772.1|FQ448772
EST:     GTAACATTTTGGAAGAAATTGTATGGAACAAGGACAAGGAAGTCTCACAG                         TTGAAAGAGAGAAAGCCTCTCGGTATGCTGAAGAAAGCTCTTGAGAATGCC
genomic: GTAACATTTTGGAAGAAATTGTATGGAACAAGGACAAGGAAGTCTCACAGgttctctttc ... tgcttttcagTTGAAAGAGAGAAAGCCTCTCGGTATGCTGAAGAAAGCTCTTGAGAATGCC
EST: gi|352795534|gb|FQ480122.1|FQ480122
EST:     GTAACATTTTGGAAGAAATTGTATGGAACAAGGACAAGGAAGTCTCACAG                         TTGAAAGAGAGAAAGCCTCTCGGTATGCTGAAGAAAGCTCTTGAGAATGCC
genomic: GTAACATTTTGGAAGAAATTGTATGGAACAAGGACAAGGAAGTCTCACAGgttctctttc ... tgcttttcagTTGAAAGAGAGAAAGCCTCTCGGTATGCTGAAGAAAGCTCTTGAGAATGCC
EST: gi|352789729|gb|FQ478544.1|FQ478544
EST:     GTAACATTTTGGAAGAAATTGTATGGAACAAGGACAAGGAAGTCTCACAG                         TTGAAAGAGAGAAAGCCTCTCGGTATGCTGAAGAAAGCTCTTGAGAATGCC
genomic: GTAACATTTTGGAAGAAATTGTATGGAACAAGGACAAGGAAGTCTCACAGgttctctttc ... tgcttttcagTTGAAAGAGAGAAAGCCTCTCGGTATGCTGAAGAAAGCTCTTGAGAATGCC
EST: gi|71855838|gb|DT004893.1|DT004893
EST:     GTAACATTTTGGAAGAAATTGTATGGAACAAGGACAAGGAAGTCTCACAG                         TTGAAAGAGAGAAAGCCTCTCGGTATGCTGAAGAAAGCTCTGGAGAATGCC
genomic: GTAACATTTTGGAAGAAATTGTATGGAACAAGGACAAGGAAGTCTCACAGgttctctttc ... tgcttttcagTTGAAAGAGAGAAAGCCTCTCGGTATGCTGAAGAAAGCTCTTGAGAATGCC
EST: gi|110697753|gb|EE075019.1|EE075019
EST:     GTAACATTTTGGAAGAAATTGTATGGAACAAGGACAAGGAAGTCTCACAG                         TTGAAAGAGAGAAAGCCTCTCGGTATGCTGAAGAAAGCTCTTGAGAATGCC
genomic: GTAACATTTTGGAAGAAATTGTATGGAACAAGGACAAGGAAGTCTCACAGgttctctttc ... tgcttttcagTTGAAAGAGAGAAAGCCTCTCGGTATGCTGAAGAAAGCTCTTGAGAATGCC
EST: gi|351053257|gb|FQ459125.1|FQ459125
EST:     GTAACATTTTGGAAGAAATTGTATGGAACAAGGACAAGGAAGTCTCACAG                         TTGAAAGAGAGAAAGCCTCTCGGTATGCTGAAGAAAGCTCTTGAGAATGCC
genomic: GTAACATTTTGGAAGAAATTGTATGGAACAAGGACAAGGAAGTCTCACAGgttctctttc ... tgcttttcagTTGAAAGAGAGAAAGCCTCTCGGTATGCTGAAGAAAGCTCTTGAGAATGCC
EST: gi|351045623|gb|FQ440808.1|FQ440808
EST:     GTAACATTTTGGAAGAAATTGTATGGAACAAGGACAAGGAAGTCTCACAG                         TTGAAAGAGAGAAAGCCTCTCGGTATGCTGAAGAAAGCTCTTGAGAATGCC
genomic: GTAACATTTTGGAAGAAATTGTATGGAACAAGGACAAGGAAGTCTCACAGgttctctttc ... tgcttttcagTTGAAAGAGAGAAAGCCTCTCGGTATGCTGAAGAAAGCTCTTGAGAATGCC
EST: gi|351041749|gb|FQ455959.1|FQ455959
EST:     GTAACATTTTGGAAGAAATTGTATGGAACAAGGACAAGGAAGTCTCACAG                         TTGAAAGAGAGAAAGCCTCTCGGTATGCTGAAGAAAGCTCTTGAGAATGCC
genomic: GTAACATTTTGGAAGAAATTGTATGGAACAAGGACAAGGAAGTCTCACAGgttctctttc ... tgcttttcagTTGAAAGAGAGAAAGCCTCTCGGTATGCTGAAGAAAGCTCTTGAGAATGCC
EST: gi|352798538|gb|FQ480563.1|FQ480563
EST:     GTAACATTTTGGAAGAAATTGTATGGAACAAGGACAAGGAAGTCTCACAG                         TTGAAAGAGAGAAAGCCTCTCGGTATGCTGAAGAAAGCTCTTGAGAATGCC
genomic: GTAACATTTTGGAAGAAATTGTATGGAACAAGGACAAGGAAGTCTCACAGgttctctttc ... tgcttttcagTTGAAAGAGAGAAAGCCTCTCGGTATGCTGAAGAAAGCTCTTGAGAATGCC
EST: gi|351046111|gb|FQ442489.1|FQ442489
EST:     GTAACATTTTGGAAGAAATTGTATGGAACAAGGACAAGGAAGTCTCACAG                         TTGAAAGAGAGAAAGCCTCTCGGTATGCTGAAGAAAGCTCTTGAGAATGCC
genomic: GTAACATTTTGGAAGAAATTGTATGGAACAAGGACAAGGAAGTCTCACAGgttctctttc ... tgcttttcagTTGAAAGAGAGAAAGCCTCTCGGTATGCTGAAGAAAGCTCTTGAGAATGCC
EST: gi|351054706|gb|FQ462736.1|FQ462736
EST:     GTAACATTTTGGAAGAAATTGTATGGAACAAGGACAAGGAAGTCTCACAG                         TTGAAAGAGAGAAAGCCTCTCGGTATGCTGAAGAAAGCTCTTGAGAATGCC
genomic: GTAACATTTTGGAAGAAATTGTATGGAACAAGGACAAGGAAGTCTCACAGgttctctttc ... tgcttttcagTTGAAAGAGAGAAAGCCTCTCGGTATGCTGAAGAAAGCTCTTGAGAATGCC
EST: gi|351022159|gb|FQ438744.1|FQ438744
EST:     GTAACATTTTGGAAGAAATTGTATGGAACAAGGACAAGGAAGTCTCACAG                         TTGAAAGAGAGAAAGCCTCTCGGTATGCTGAAGAAAGCTCTTGAGAATGCC
genomic: GTAACATTTTGGAAGAAATTGTATGGAACAAGGACAAGGAAGTCTCACAGgttctctttc ... tgcttttcagTTGAAAGAGAGAAAGCCTCTCGGTATGCTGAAGAAAGCTCTTGAGAATGCC
EST: gi|351055066|gb|FQ440405.1|FQ440405
EST:     GTAACATTTTGGAAGAAATTGTATGGAACAAGGACAAGGAAGTCTCACAG                         TTGAAAGAGAGAAAGCCTCTCGGTATGCTGAAGAAAGCTCTTGAGAATGCC
genomic: GTAACATTTTGGAAGAAATTGTATGGAACAAGGACAAGGAAGTCTCACAGgttctctttc ... tgcttttcagTTGAAAGAGAGAAAGCCTCTCGGTATGCTGAAGAAAGCTCTTGAGAATGCC
EST: gi|349817938|gb|FQ407927.1|FQ407927
EST:     GTAACATTTTGGAAGAAATTGTATGGAACAAGGACAAGGAAGTCTCACAG                         TTGAAAGAGAGAAAGCCTCTCGGTATGCTGAAGAAAGCTCTTGAGAATGCC
genomic: GTAACATTTTGGAAGAAATTGTATGGAACAAGGACAAGGAAGTCTCACAGgttctctttc ... tgcttttcagTTGAAAGAGAGAAAGCCTCTCGGTATGCTGAAGAAAGCTCTTGAGAATGCC
EST: gi|110724707|gb|EE100769.1|EE100769
EST:     GTAACATTTTGGAAGAAATTGTATGGAACAAGGACAAGGAAGTCTCACAG                         TTGAAAGAGAGAAAGCCTCTCGGTATGCTGAAGAAAGCTCTTGAGAATGCC
genomic: GTAACATTTTGGAAGAAATTGTATGGAACAAGGACAAGGAAGTCTCACAGgttctctttc ... tgcttttcagTTGAAAGAGAGAAAGCCTCTCGGTATGCTGAAGAAAGCTCTTGAGAATGCC
EST: gi|110709662|gb|EE085318.1|EE085318
EST:     GTAACATTTTGGAAGAAATTGTATGGAACAAGGACAAGGAAGTCTCACAG                         TTGAAAGAGAGAAAGCCTCTCGGTATGCTGAAGAAAGCTCTTGAGAATGCC
genomic: GTAACATTTTGGAAGAAATTGTATGGAACAAGGACAAGGAAGTCTCACAGgttctctttc ... tgcttttcagTTGAAAGAGAGAAAGCCTCTCGGTATGCTGAAGAAAGCTCTTGAGAATGCC
EST: gi|351055925|gb|FQ453386.1|FQ453386
EST:     GTAACATTTTGGAAGAAATTGTATGGAACAAGGACAAGGAAGTCTCACAG                         TTGAAAGAGAGAAAGCCTCTCGGTATGCTGAAGAAAGCTCTTGAGAATGCC
genomic: GTAACATTTTGGAAGAAATTGTATGGAACAAGGACAAGGAAGTCTCACAGgttctctttc ... tgcttttcagTTGAAAGAGAGAAAGCCTCTCGGTATGCTGAAGAAAGCTCTTGAGAATGCC
EST: gi|349817062|gb|FQ399809.1|FQ399809
EST:     GTAACATTTTGGAAGAAATTGTATGGAACAAGGACAAGGAAGTCTCACAG                         TTGAAAGAGAGAAAGCCTCTCGGTATGCTGAAGAAAGCTCTTGAGAATGCC
genomic: GTAACATTTTGGAAGAAATTGTATGGAACAAGGACAAGGAAGTCTCACAGgttctctttc ... tgcttttcagTTGAAAGAGAGAAAGCCTCTCGGTATGCTGAAGAAAGCTCTTGAGAATGCC
EST: gi|351044450|gb|FQ442981.1|FQ442981
EST:     GTAACATTTTGGAAGAAATTGTATGGAACAAGGACAAGGAAGTCTCACAG                         TTGAAAGAGAGAAAGCCTCTCGGTATGCTGAAGAAAGCTCTTGAGAATGCC
genomic: GTAACATTTTGGAAGAAATTGTATGGAACAAGGACAAGGAAGTCTCACAGgttctctttc ... tgcttttcagTTGAAAGAGAGAAAGCCTCTCGGTATGCTGAAGAAAGCTCTTGAGAATGCC
EST: gi|161713572|gb|FC063401.1|FC063401
EST:     GTAACATTTTGGAAGAAATTGTATGGAACAAGGACAAGGAAGTCTCACAG                         TTGAAAGAGAGAAAGCCTCTCGGTATGCTGAAGAAAGCTCTTGAGAATGCC
genomic: GTAACATTTTGGAAGAAATTGTATGGAACAAGGACAAGGAAGTCTCACAGgttctctttc ... tgcttttcagTTGAAAGAGAGAAAGCCTCTCGGTATGCTGAAGAAAGCTCTTGAGAATGCC
EST: gi|351057250|gb|FQ450957.1|FQ450957
EST:     GTAACATTTTGGAAGAAATTGTATGGAACAAGGACAAGGAAGTCTCACAG                         TTGAAAGAGAGAAAGCCTCTCGGTATGCTGAAGAAAGCTCTTGAGAATGCC
genomic: GTAACATTTTGGAAGAAATTGTATGGAACAAGGACAAGGAAGTCTCACAGgttctctttc ... tgcttttcagTTGAAAGAGAGAAAGCCTCTCGGTATGCTGAAGAAAGCTCTTGAGAATGCC
EST: gi|351036912|gb|FQ459434.1|FQ459434
EST:     GTAACATTTTGGAAGAAATTGTATGGAACAAGGACAAGGAAGTCTCACAG                         TTGAAAGAGAGAAAGCCTCTCGGTATGCTGAAGAAAGCTCTTGAGAATGCC
genomic: GTAACATTTTGGAAGAAATTGTATGGAACAAGGACAAGGAAGTCTCACAGgttctctttc ... tgcttttcagTTGAAAGAGAGAAAGCCTCTCGGTATGCTGAAGAAAGCTCTTGAGAATGCC
EST: gi|351031889|gb|FQ460146.1|FQ460146
EST:     GTAACATTTTGGAAGAAATTGTATGGAACAAGGACAAGGAAGTCTCACAG                         TTGAAAGAGAGAAAGCCTCTCGGTATGCTGAAGAAAGCTCTTGAGAATGCC
genomic: GTAACATTTTGGAAGAAATTGTATGGAACAAGGACAAGGAAGTCTCACAGgttctctttc ... tgcttttcagTTGAAAGAGAGAAAGCCTCTCGGTATGCTGAAGAAAGCTCTTGAGAATGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttgtgatgtattttgacgtgcgccctctaatgcccttgaattttgcttttcagTTGAAAGAGAGAAAGCCTCTCGGTATGCTGAAGAAAGCTCTTGAGAATGCCCCTCCCAATAGAGATTTCATTGCGGCTCTTAGGGCTTCCAATCTCCGGA
                          ctctaat  putative branch site (score: 3)
                                          ttttgcttttc  putative PPT
       atgtatttt  TA-rich tract