Sequence
atgc intronic sequence ATGC exonic sequence...tgcttttaggtaacatattcaatgttttggaagttttaattgatgtttcttttaaatgaatgcaaagctaagaatagtggtgtctttgttcaagctgcagCTCCTGAATTGGGTCCAGAGGATGCATATGGAGTTTGGAGGATTGATGATACAGACAACAGTTTTTCAACACAACCTTTTCGCATCAGATATGCTAGACA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv12s0055g00430.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA15G05480.1 (Glycine max), 3'ss of exon 2
----tgcttttaggtaacatattcaatgttttggaagttttaattgatgtt-tcttttaaatgaatgcaaagctaagaatagtggtgtctttg-ttcaagctgcagCTCCTGAATTGGGTCCAGAGGATGCATATGGAGTTTGGAGGATTGATGATACAGACAACAGTTTTTCAACACAACCTTTTCGCATCAGATATGCTAGACA
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gctgagcatttacttttt-tgcccagttaatttgccgtcgtgcatggtattgtttcttagatcgata-aaatctttgaatc----tgtctttcctttgagctgcagCTCCTGAAGTGGGTGCTGACAATTTATGTGGAGTTTGGATGATTGATGATAAAGACAACAGTTTTTCAACACCATCATTCCGGATTAGATATGCAAGGCA
upper sequence: Vv12s0055g00430.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA08G08190.1 (Glycine max), 3'ss of exon 2
----tgcttttaggtaacatattcaatgttttggaagttttaattgatgtttcttttaaatgaatgcaaagctaagaatagtggtgtctttgttcaagctgcagCTCCTGAATTGGGTCCAGAGGATGCATATGGAGTTTGGAGGATTGATGATACAGACAACAGTTTTTCAACACAACCTTTTCGCATCAGATATGCTAGACA
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tttgttcttttagttagtttgttgtattgctttatatttgtgtttgatgttt--taaatatagagtaacatcttagaat--ccatccttttctttgagctgcagCTCCTGAAGTGGGTTCTGACAATTTATGTAGAGTCTGGATGATTGATGATACAGACAACAGTTTTTCAACACCACCTTTCCATATTAAATATGCAAGACA
upper sequence: Vv12s0055g00430.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA08G19570.1 (Glycine max), 3'ss of exon 2
---tgcttttaggtaacatattcaatgttttggaagttttaattgatgtttctt-ttaaatgaatgcaaagctaagaatagtggtgtctttgttcaagctgcagCTCCTGAATTGGGTCCAGAGGATGCATATGGAGTTTGGAGGATTGATGATACAGACAACAGTTTTTCAACACAACCTTTTCGCATCAGATATGCTAGACA
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ctgagcatttatttttt-tgcccggttaatttgccgtcttacataatatttcttcttagatcgattaaaatctttgaat--ccgtctttcc-tttgagctgcagCTCCTGAAGTGGGTGCTGACAATTTATGTGGAGTTTGGATGATTGATGATAAAGACAACAGTTTTTCAACGCCGTCATTCCGGATTAGATATGCAAGGCA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttcttttaaatgaatgcaaagctaagaatagtggtgtctttgttcaagctgcagCTCCTGAATTGGGTCCAGAGGATGCATATGGAGTTTGGAGGATTGATGATACAGACAACAGTTTTTCAACACAACCTTTTCGCATCAGATATGCTAGACA
tctttgttc CT-rich tract
tttaaatgaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgcttttaggtaacatattcaatgttttggaagttttaattgatgtttcttttaaatgaatgcaaagctaagaatagtggtgtctttgttcaagctgcagCTCCTGAATTGGGTCCAGAGGATGCATATGGAGTTTGGAGGATTGATGATACAGACAACAGTTTTTCAACACAACCTTTTCGCATCAGATATGCTAGACA
- - - - - - - - - -caatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggtgtc