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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactttgctgctctgttattattctttttatttttttgacgtgtatttgaaatattctcacccttatatggttcaattttttttcctattgaagTTATCTGTTGGAACTCAAAGGCTTGAAGAGTTGGCTCTTAAACAATCTAGGCAATTAATTCCCATGACACCATCCATGCCTAAAACCCTG

Basic information

species Vitis vinifera
transcript Vv12s0055g00330.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0055g00330.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA05G25260.1 (Glycine max), 3'ss of exon 3
gtaactttgctgctctgttattattctttttatttttttgacgtgtatttgaaatattctcacccttatatggttcaattttttttcctattgaagTTATCTGTTGGAACTCAAAGGCTTGAAGAGTTGGCTCTTAAACAATCTAGGCAATTAATTCCCATGACACCATCCATGCCTAAAACCCTG
||   |||| || |   ||  |||| |   |  ||| ||||  ||| ||   ||| |    || || ||  |||  | ||||  || |      ||||||||| | | ||||||| ||||||||||||||| ||||| |||||||||  |||||| ||  ||||||||||||  || | | |||||
gtgtgtttgatgttgaatt-ctattttaagttgtttgttgaaatgttttcagaatttcagtactctcat--ggtgtatttttccttac------agTTATCTGCTAGTACTCAAAAGCTTGAAGAGTTGGCCCTTAAGCAATCTAGGTTATTAATCCCTGTGACACCATCCACACCAAGATCCCTG

upper sequence: Vv12s0055g00330.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA08G08280.1 (Glycine max), 3'ss of exon 4
gtaactttgctgctctgttattattctttttatttttttgacgtgtatttgaaatattctcacc-cttatatggttcaattttttttcctattgaagTTATCTGTTGGAACTCAAAGGCTTGAAGAGTTGGCTCTTAAACAATCTAGGCAATTAATTCCCATGACACCATCCATGCCTAAAACCCTG
||   |||| || |   || |  ||    || ||||| ||        ||||||| || |||   ||  ||||||   || ||||| | ||    ||||||||| | | ||||||| |||||||| |||||| ||||| ||||| |||  |||||| ||  ||||||||||||  || | | |||||
gtgtgtttgatgttgaattctattttaaattgtttttctg--------ttgaaatgttttcattactcttatggt---atatttttccatac---agTTATCTGCTAGTACTCAAAAGCTTGAAGCGTTGGCCCTTAAGCAATCCAGGTTATTAATCCCTGTGACACCATCCACACCAAGATCCCTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgtgtatttgaaatattctcacccttatatggttcaattttttttcctattgaagTTATCTGTTGGAACTCAAAGGCTTGAAGAGTTGGCTCTTAAACAATCTAGGCAATTAATTCCCATGACACCATCCATGCCTAAAACCCTG
               ttctcac  putative branch site (score: 2)
                                ttcaattttttttcct  putative PPT
                        ttatatggttcaattt  TA-rich tract