1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...actattgctaatgttttagctttggatcttctgaaaatgctcagtcagttagattatgcaattgtattctgatgtacacagttcctcctctttttgacagGTTGGAATAGGAGATACTTCCGGGGGGAGTACAACTCCCAATGACCATTATTGTTGGATGCGCCCTGAGGACATTGATTATAAACGTCCTGTAACAGAAT
species | Vitis vinifera |
transcript | Vv12s0035g02180.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCAAAACTTTCAATTCTTCTGCTGATACCATAGACAGGATGGTTGCACAG GTTGGAATAGGAGATACTTCCGGGGGGAGTACAACTCCCAATGACCATTATEST: gi|110710843|gb|EE087364.1|EE087364
genomic: TCAAAACTTTCAATTCTTCTGCTGATACCATAGACAGGATGGTTGCACAGgtaaatttat ... tttttgacagGTTGGAATAGGAGATACTTCCGGGGGGAGTACAACTCCCAATGACCATTAT
EST: TCAAAACTTTCAATTCTTCTGCTGATACCATAGACAGGATGGTTGCACAG GTTGGAATAGGAGATACTTCCGGGGGGAGTACAACTCCCAATGACCATTATEST: gi|110700071|gb|EE077691.1|EE077691
genomic: TCAAAACTTTCAATTCTTCTGCTGATACCATAGACAGGATGGTTGCACAGgtaaatttat ... tttttgacagGTTGGAATAGGAGATACTTCCGGGGGGAGTACAACTCCCAATGACCATTAT
EST: TCAAAACTTTCAATTCTTCTGCTGATACCATAGACAGGATGGTTGCACAG GTTGGAATAGGAGATACTTCCGGGGGGAGTACAACTCCCAATGACCATTATEST: gi|30298694|gb|CB975488.1|CB975488
genomic: TCAAAACTTTCAATTCTTCTGCTGATACCATAGACAGGATGGTTGCACAGgtaaatttat ... tttttgacagGTTGGAATAGGAGATACTTCCGGGGGGAGTACAACTCCCAATGACCATTAT
EST: TCAAAACTTTCAATTCTTCTGCTGATACCATAGACAGGATGGTTGCACAG GTTGGAATAGGAGATACTTCCGGGGGGAGTACAACTCCCAATGACCATTATEST: gi|37188535|gb|CF607884.1|CF607884
genomic: TCAAAACTTTCAATTCTTCTGCTGATACCATAGACAGGATGGTTGCACAGgtaaatttat ... tttttgacagGTTGGAATAGGAGATACTTCCGGGGGGAGTACAACTCCCAATGACCATTAT
EST: TCAAAACTTTCAATTCTTCTGCTGATACCATAGACAGGATGGTTGCACAG GTTGGAATAGGAGATACTTCCGGGGGGAGTACAACTCCCAATGACCATTATEST: gi|161707094|gb|FC055557.1|FC055557
genomic: TCAAAACTTTCAATTCTTCTGCTGATACCATAGACAGGATGGTTGCACAGgtaaatttat ... tttttgacagGTTGGAATAGGAGATACTTCCGGGGGGAGTACAACTCCCAATGACCATTAT
EST: TCAAAACTTTCAATTCTTCTGCTGATACCATAGACAGGATGGTTGCACAG GTTGGAATAGGAGAATACTTCCGGGGG-AGTACAACTCCCAATGACC
genomic: TCAAAACTTTCAATTCTTCTGCTGATACCATAGACAGGATGGTTGCACAGgtaaatttat ... tttttgacagGTTGGAATAGGAGA-TACTTCCGGGGGGAGTACAACTCCCAATGACC
cagttagattatgcaattgtattctgatgtacacagttcctcctctttttgacagGTTGGAATAGGAGATACTTCCGGGGGGAGTACAACTCCCAATGACCATTATTGTTGGATGCGCCCTGAGGACATTGATTATAAACGTCCTGTAACAGAAT
ttctgat putative branch site (score: 3)
cagttcctcctctttt putative PPT
aattgtatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actattgctaatgttttagctttggatcttctgaaaatgctcagtcagttagattatgcaattgtattctgatgtacacagttcctcctctttttgacagGTTGGAATAGGAGATACTTCCGGGGGGAGTACAACTCCCAATGACCATTATTGTTGGATGCGCCCTGAGGACATTGATTATAAACGTCCTGTAACAGAAT
- - - gctaatg
- - - - - - - - - - - - - - - - gaaaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - tatgcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtacaca