Sequence
atgc intronic sequence ATGC exonic sequence...ttttatttctgttttatctgatgattaaggattactgatgtggttgtttattgtccgatttgaattaactgttttgacacttctcttttacatgctgcagGCTACTGCGGGAGGAAGAAATTGACAATGATGGTGATCCCTAGCATTTTTATCCCAGAAGACTGGTCCTTTACTTTTTATGAAGGTCTGAACAGACATCC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv12s0035g01920.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA16G00210.1 (Glycine max), 3'ss of exon 1
ttttatttctgttttatctgatgattaaggattactgatgtggttgtttattgtccgatttgaattaactgttttgacacttctcttttacatgctgcagGCTACTGCGGGAGGAAGAAATTGACAATGATGGTGATCCCTAGCATTTTTATCCCAGAAGACTGGTCCTTTACTTTTTATGAAGGTCTGAACAGACATCC
|| | | || | | || | || | || | | || | || ||| |||||| | |||||| || |||||||| |||||||| || || ||||||||| |||| |||||||||||||| |||||||| ||||| | || ||||||||
---------------------------------------gtatgtatgtacgttttgcctttaccta-ttattgtctcgctaatgcattgcat--tgcagGGCATCACGGGAGAAACAAATTGACTATGATGGTCATTCCAAGCATTTTTCTCCCCGAAGACTGGTCCTTCACTTTTTACGAAGGCATTAATAGACATCC
upper sequence: Vv12s0035g01920.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA12G28490.1 (Glycine max), 3'ss of exon 1
ttttatttctgttttatctgatgattaaggattactgatgtggttgtttattgtccgatttgaattaactgttttgacacttctcttttacatgctgcagGCTACTGCGGGAGGAAGAAATTGACAATGATGGTGATCCCTAGCATTTTTATCCCAGAAGACTGGTCCTTTACTTTTTATGAAGGTCTGAACAGACATCC
| || | ||| |||| || | || | | | || || ||| | || | || ||| |||||| | ||| || || |||||||| |||||||| || || ||||||||| | || ||||||||||| || |||||||| ||||| | || ||||||||
--------------------gtatgtatgtattgt--atgtatttcccttttccctattgt---ctatctttttcctcgctaatgcattgcat--tgcagGACATCACGGCAGAAACAAATTGACTATGATGGTCATTCCAAGCATTTTTCTACCCGAAGACTGGTCATTCACTTTTTACGAAGGGATTAATAGACATCC
upper sequence: Vv12s0035g01920.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT5G49810.1 (Arabidopsis thaliana), 3'ss of exon 1
ttttatttctgttttatctgatgattaaggattactgatgtggt-tgtttattgtccgat--ttgaattaactgttttgacacttctcttttacatgctgcagGCTACTGCGGGAGGAAGAAATTGACAATGATGGTGATCCCTAGCATTTTTATCCCAGAAGACTGGTCCTTTACTTTTTATGAAGGTCTGAACAGACATCC
||| ||| | ||| || | ||| | | | |||| | | || ||| || | | | | | | || | || ||||| ||||| || || || |||||||| || ||||| |||||||| |||||||||||||| ||||| ||||||||||| || |||||||||||
---tatatctctaacatcccattgctgcagatattggctaccttatgttcaggaaaccattcttgtatcagacaccaacatatctttatatttttttctatagGCTTTCAGTCCAGGAAAAAGTTAACCATGATGGTCATTCCTAGTATTTTTATTCCAGAAGACTGGTCATTTACATTTTATGAAGGACTTAACAGACATCC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtttattgtccgatttgaattaactgttttgacacttctcttttacatgctgcagGCTACTGCGGGAGGAAGAAATTGACAATGATGGTGATCCCTAGCATTTTTATCCCAGAAGACTGGTCCTTTACTTTTTATGAAGGTCTGAACAGACATCC
cacttctcttttac CT-rich tract
atttgaattaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttttatttctgttttatctgatgattaaggattactgatgtggttgtttattgtccgatttgaattaactgttttgacacttctcttttacatgctgcagGCTACTGCGGGAGGAAGAAATTGACAATGATGGTGATCCCTAGCATTTTTATCCCAGAAGACTGGTCCTTTACTTTTTATGAAGGTCTGAACAGACATCC
- - - - - - - - -ctgatga
- - - - - - - - - - - - - - - - - - - -gtggttg