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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatacaagtatggtactttttttttgtctttcccatgttagatttctagttcaactagctaaaaaagttgattgtagGTAAAGATAACGGTACCGGCGATCTGGGGTCGGATTTGAAGACATGGTTGAGCTCTACTTTCACTAATCAGGACACATGCATAGAGGGATTTGTTGGTAC

Basic information

species Vitis vinifera
transcript Vv12s0035g01900.t01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161705658|gb|FC054862.1|FC054862
EST:     TGCAGCTGATGATCTGAGCTGGTCCCTTTCTGCCATTCAGAATCCTAAAG                         GTAAAGATAACGGTACCGGCGATCTGGGG
genomic: TGCAGCTGATGATCTGAGCTGGTCCCTTTCTGCCATTCAGAATCCTAAAGgtatatacaa ... ttgattgtagGTAAAGATAACGGTACCGGCGATCTGGGG
EST: gi|110356967|gb|EC920174.1|EC920174
EST:     TGCAGCTGATGATCTGAGCTGGTCCCTTTCTGCCATTCAGAATCCTAAAG                         GTAAAGATAACGGTACCGGCGATCTGGGGTCGGATTTGAAGACATGGTTGA
genomic: TGCAGCTGATGATCTGAGCTGGTCCCTTTCTGCCATTCAGAATCCTAAAGgtatatacaa ... ttgattgtagGTAAAGATAACGGTACCGGCGATCTGGGGTCGGATTTGAAGACATGGTTGA
EST: gi|110723592|gb|EE101078.1|EE101078
EST:     TGCAGCTGATGATCTGAGCTGGTCCCTTTCTGCCATTCAGAATCCTAAAG                         GTAAAGATAACGGTACCGGCGATCTGGGGTCGGATTTGAAGACATTGTTGA
genomic: TGCAGCTGATGATCTGAGCTGGTCCCTTTCTGCCATTCAGAATCCTAAAGgtatatacaa ... ttgattgtagGTAAAGATAACGGTACCGGCGATCTGGGGTCGGATTTGAAGACATGGTTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgtctttcccatgttagatttctagttcaactagctaaaaaagttgattgtagGTAAAGATAACGGTACCGGCGATCTGGGGTCGGATTTGAAGACATGGTTGAGCTCTACTTTCACTAATCAGGACACATGCATAGAGGGATTTGTTGGTAC
                                     taaaaaagttgatt  TA-rich tract