1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ccaggaaaaatgtggtttgcacatctaaagcattattattttttaatttaattttgtcatgctgcatcactgtattcatgaatcactccctccctaacagAACTACACAAGAAAGAAACATGCGAAGCAGTAACTATCATAGAAACGCCACCAATGGTGGTTGTTGGTGTTGTTGGTTATCTCAAGACACCGCGTGGCCT
species | Vitis vinifera |
transcript | Vv12s0035g01020.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
atttaattttgtcatgctgcatcactgtattcatgaatcactccctccctaacagAACTACACAAGAAAGAAACATGCGAAGCAGTAACTATCATAGAAACGCCACCAATGGTGGTTGTTGGTGTTGTTGGTTATCTCAAGACACCGCGTGGCCT
tcactccctccct CT-rich tract
attttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccaggaaaaatgtggtttgcacatctaaagcattattattttttaatttaattttgtcatgctgcatcactgtattcatgaatcactccctccctaacagAACTACACAAGAAAGAAACATGCGAAGCAGTAACTATCATAGAAACGCCACCAATGGTGGTTGTTGGTGTTGTTGGTTATCTCAAGACACCGCGTGGCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- -ggaaaaa
- - - - - - tggtttg
- - - - - - - - - - - - -taaagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tcatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catcact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcatgaa