1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...actgggttctcatagggttgttgggtttctttcgtgatattctcctttatactttctcaggtgagtacttaatgattttccttgtttttgttttgcttagAGGACACATTGAAGGCACTGAAAGAGAAGGCAAAAGAGCCACAGGCACCGGAACCAGAACCTGAACCAACTACTGAAGTTCTTTTTCTTTGCAGCTATGA
species | Vitis vinifera |
transcript | Vv12s0035g00660.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGATCTTGTAGCAACTGGTGGGAAGTGCTTAGTTTATAAATGGGTCACGG AGGACACATTGAAGGCACTGAAAGAGAAGGCAAAAGAGCCACAGGCACCGGEST: gi|110729446|gb|EE105404.1|EE105404
genomic: AGATCTTGTAGCAACTGGTGGGAAGTGCTTAGTTTATAAATGGGTCACGGgtaagttgta ... ttttgcttagAGGACACATTGAAGGCACTGAAAGAGAAGGCAAAAGAGCCACAGGCACCGG
EST: AGATCTTGTAGCAACTGGTGGGAAGTGCTTAGTTTATAAATGGGTCACGG AGGACACATTGAAGGCACTGAAAGAGAAGGCAAAAGAGCCACAGGCACCGG
genomic: AGATCTTGTAGCAACTGGTGGGAAGTGCTTAGTTTATAAATGGGTCACGGgtaagttgta ... ttttgcttagAGGACACATTGAAGGCACTGAAAGAGAAGGCAAAAGAGCCACAGGCACCGG
tttatactttctcaggtgagtacttaatgattttccttgtttttgttttgcttagAGGACACATTGAAGGCACTGAAAGAGAAGGCAAAAGAGCCACAGGCACCGGAACCAGAACCTGAACCAACTACTGAAGTTCTTTTTCTTTGCAGCTATGA
acttaat putative branch site (score: 4)
ttttccttgtttttgt putative PPT
tacttaatgatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actgggttctcatagggttgttgggtttctttcgtgatattctcctttatactttctcaggtgagtacttaatgattttccttgtttttgttttgcttagAGGACACATTGAAGGCACTGAAAGAGAAGGCAAAAGAGCCACAGGCACCGGAACCAGAACCTGAACCAACTACTGAAGTTCTTTTTCTTTGCAGCTATGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - gggttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttccttg