1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...caaatggcatttttaacttgtatgcagagattagaacttgtagaatacgttggcactgtttgaaactcgttctgaatgtctataatgtttctttttatagATTGAACTCCGGAACCCATGCCGTGAGGGGAAAAAACTGCTTGTGCTGGATATCGATTATACTCTATTTGATCACCGTTCAACAGCAGAGAACCCTCTTG
species | Vitis vinifera |
transcript | Vv12s0035g00640.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATAAAGAGGTCAATAAGCAGAAATTGAGAAGACGTATTTATCAATACAAG ATTGAACTCCGGAACCCATGCCGTGAGGGGAAAAAACTGCTTGTGCTGGATEST: gi|110731088|gb|EE108908.1|EE108908
genomic: ATAAAGAGGTCAATAAGCAGAAATTGAGAAGACGTATTTATCAATACAAGgtcagtcact ... ctttttatagATTGAACTCCGGAACCCATGCCGTGAGGGGAAAAAACTGCTTGTGCTGGAT
EST: ATAAAGAGGTCAATAAGCAGAAATTGAGAAGACGTATTTATCAATACAAG ATTGAACTCCGGAACCCATGCCGTGAGGGGAAAAAACTGCTTGTGCTGGATEST: gi|110712069|gb|EE089270.1|EE089270
genomic: ATAAAGAGGTCAATAAGCAGAAATTGAGAAGACGTATTTATCAATACAAGgtcagtcact ... ctttttatagATTGAACTCCGGAACCCATGCCGTGAGGGGAAAAAACTGCTTGTGCTGGAT
EST: ATAAAGAGGTCAATAAGCAGAAATTGAGAAGACGTATTTATCAATACAAG ATTGAACTCCGGAACCCATGCCGTGAGGGGAAAAAACTGCTTGTGCTGGATEST: gi|110731285|gb|EE105571.1|EE105571
genomic: ATAAAGAGGTCAATAAGCAGAAATTGAGAAGACGTATTTATCAATACAAGgtcagtcact ... ctttttatagATTGAACTCCGGAACCCATGCCGTGAGGGGAAAAAACTGCTTGTGCTGGAT
EST: ATAAAGAGGTCAATAAGCAGAAATTGAGAAGACGTATTTATCAATACAAG ATTGAACTCCGGAACCCATGCCGTGAGGGGAAAAAACTGCTTGTGCTGGATEST: gi|294966960|gb|GW839835.1|GW839835
genomic: ATAAAGAGGTCAATAAGCAGAAATTGAGAAGACGTATTTATCAATACAAGgtcagtcact ... ctttttatagATTGAACTCCGGAACCCATGCCGTGAGGGGAAAAAACTGCTTGTGCTGGAT
EST: ATAAAGAGGTCAATAAGCAGAAATTGAGAAGACGTATTTATCAATACAAG ATTGAACTCCGGAACCCATGCCGTGAGGGGAAAAAACTGCTTGTGCTGGATEST: gi|33409794|gb|CF215421.1|CF215421
genomic: ATAAAGAGGTCAATAAGCAGAAATTGAGAAGACGTATTTATCAATACAAGgtcagtcact ... ctttttatagATTGAACTCCGGAACCCATGCCGTGAGGGGAAAAAACTGCTTGTGCTGGAT
EST: ATAAAGAGGTCAATAAGCAGAAATTAAGAAGACGTATTTATCAATACAAG ATTGAACTCCGGAACCCATGCCGTGAGGGGAAAAAACTGCTTGTGCTGGAT
genomic: ATAAAGAGGTCAATAAGCAGAAATTGAGAAGACGTATTTATCAATACAAGgtcagtcact ... ctttttatagATTGAACTCCGGAACCCATGCCGTGAGGGGAAAAAACTGCTTGTGCTGGAT
tacgttggcactgtttgaaactcgttctgaatgtctataatgtttctttttatagATTGAACTCCGGAACCCATGCCGTGAGGGGAAAAAACTGCTTGTGCTGGATATCGATTATACTCTATTTGATCACCGTTCAACAGCAGAGAACCCTCTTG
tgtttcttttt CT-rich tract
tctataatgtttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caaatggcatttttaacttgtatgcagagattagaacttgtagaatacgttggcactgtttgaaactcgttctgaatgtctataatgtttctttttatagATTGAACTCCGGAACCCATGCCGTGAGGGGAAAAAACTGCTTGTGCTGGATATCGATTATACTCTATTTGATCACCGTTCAACAGCAGAGAACCCTCTTG
- aatggca
- - - - - - - - - -gtatgca
- - - - - - - - - - - - - - - - - - - - -agaatac
- - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaatgtc