1 5' 3' | 2 5' 3' | 3 5' 3' |
...aaaaaacaagcatatttgaccttagaatattgcaaattttgctgctgcatcatctacatattgtaactttattgaggaaggaatatctgttcaatgtcagGTGAGGGATGAACTTGAACACCTTTTAGATGACAATGAGGACATGGCAGATTTATACTTAACAAGGAAGTGGATCCAGAATCAGCAAAATGAGGCTTTGT
species | Vitis vinifera |
transcript | Vv12s0034g02550.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCCGGAGTTTAAAAAGCAATCTTACACGCCTTCTCGCCCGAGTGCAAAAG GTGAGGGATGAACTTGAACACCTTTTAGATGACAATGAGGACATGGCAGATEST: gi|110375952|gb|EC940982.1|EC940982
genomic: TCCGGAGTTTAAAAAGCAATCTTACACGTCTTCTCGCCCGAGTGCAAAAGgtattcttct ... tcaatgtcagGTGAGGGATGAACTTGAACACCTTTTAGATGACAATGAGGACATGGCAGAT
EST: TCCGGAGTTTAAAAAGCAATCTTACACGTCTTCTCGCCCGAGTGCAAAAG GTGAGGGATGAACTTGAACACCTTTTAGATGACAATGAGGACATGGCAGATEST: gi|294966445|gb|GW839552.1|GW839552
genomic: TCCGGAGTTTAAAAAGCAATCTTACACGTCTTCTCGCCCGAGTGCAAAAGgtattcttct ... tcaatgtcagGTGAGGGATGAACTTGAACACCTTTTAGATGACAATGAGGACATGGCAGAT
EST: TCCGGAGTTTAAAAAGCAATCTTACACGTCTTCTCGCCCGAGTGCAAAAG GTGAGGGATGAACTTGAACACCTTTTAGATGACAATGAGGACATGGCAGAT
genomic: TCCGGAGTTTAAAAAGCAATCTTACACGTCTTCTCGCCCGAGTGCAAAAGgtattcttct ... tcaatgtcagGTGAGGGATGAACTTGAACACCTTTTAGATGACAATGAGGACATGGCAGAT
tgcatcatctacatattgtaactttattgaggaaggaatatctgttcaatgtcagGTGAGGGATGAACTTGAACACCTTTTAGATGACAATGAGGACATGGCAGATTTATACTTAACAAGGAAGTGGATCCAGAATCAGCAAAATGAGGCTTTGT
ttgtaac putative branch site (score: 2)
tctgttc putative PPT
atattgtaactttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaaaacaagcatatttgaccttagaatattgcaaattttgctgctgcatcatctacatattgtaactttattgaggaaggaatatctgttcaatgtcagGTGAGGGATGAACTTGAACACCTTTTAGATGACAATGAGGACATGGCAGATTTATACTTAACAAGGAAGTGGATCCAGAATCAGCAAAATGAGGCTTTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- aaaacaa
- - - - - - - - - - - - - - - - - - - - gctgctg
- - - - - - - - - - - - - - - - - - - - - - - -catcatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aggaata