1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ttctttttggttcaattttaatatgcataaattatttctctttactgatgtcttaataaatgagcaaactctaaattttccttttctaacttgaatatagGTAAGAACTATGAGAAGGTCTGTGAAATGTGCCACATTACACTCAATAAAATTGCTATATTCGGTGATAATGGCACTATTACTCCTGGAGGTGTAAGGAT
species | Vitis vinifera |
transcript | Vv12s0034g02380.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CACAGACAACCATTTGTTACTTTGGGATCTTAGAACTCTGGGATTGACAG GTAAGAACTATGAGAAGGTCTGTGAAATGTGCCACATTACACTCAATAAAAEST: gi|352763878|gb|FQ465328.1|FQ465328
genomic: CACAGACAACCATTTGTTACTTTGGGATCTTAGAACTCTGGGATTGACAGgtattagctt ... ttgaatatagGTAAGAACTATGAGAAGGTCTGTGAAATGTGCCACATTACACTCAATAAAA
EST: CACAGACAACCATTTGTTACTTTGGGATCTTAGAACTCTGGGATTGACAG GTAAGAACTATGAGAAGGTCTGTGAAATGTGCCACATTACACTCAATAAAAEST: gi|22015420|gb|BQ800454.1|BQ800454
genomic: CACAGACAACCATTTGTTACTTTGGGATCTTAGAACTCTGGGATTGACAGgtattagctt ... ttgaatatagGTAAGAACTATGAGAAGGTCTGTGAAATGTGCCACATTACACTCAATAAAA
EST: TTGTTACTTTGGGATCTTAGAACTCTGGGATTGACAG GTAAGAACTATGAGAAGGTCTGTGAAATGTGCCACATTACACTCAATAAAAEST: gi|110360829|gb|EC924233.1|EC924233
genomic: TTGTTACTTTGGGATCTTAGAACTCTGGGATTGACAGgtattagctt ... ttgaatatagGTAAGAACTATGAGAAGGTCTGTGAAATGTGCCACATTACACTCAATAAAA
EST: CACAGACAACCATTTGTTACTTTGGGATCTTAGAACTCTGGGATTGACAG GTAAGAACTATGAGAAGGTCTGTGAAATGTGCCACATTACACTCAATAAAA
genomic: CACAGACAACCATTTGTTACTTTGGGATCTTAGAACTCTGGGATTGACAGgtattagctt ... ttgaatatagGTAAGAACTATGAGAAGGTCTGTGAAATGTGCCACATTACACTCAATAAAA
tgatgtcttaataaatgagcaaactctaaattttccttttctaacttgaatatagGTAAGAACTATGAGAAGGTCTGTGAAATGTGCCACATTACACTCAATAAAATTGCTATATTCGGTGATAATGGCACTATTACTCCTGGAGGTGTAAGGAT
ttctaac putative branch site (score: 1)
ttttccttttctaact CT-rich tract
aaactctaaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttctttttggttcaattttaatatgcataaattatttctctttactgatgtcttaataaatgagcaaactctaaattttccttttctaacttgaatatagGTAAGAACTATGAGAAGGTCTGTGAAATGTGCCACATTACACTCAATAAAATTGCTATATTCGGTGATAATGGCACTATTACTCCTGGAGGTGTAAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - -tatgcat
- - - - - - - - - - - - - - - - - - - - - - -tgatgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - aataaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaactc