1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ctaattgtccctttattctttatctgaatgttcttgctcaaactataatatttgtcttgtacattcaggttgacagaactgaatattgtggttcttttagGTGGTGAAAGGAGAGGTTCCTGTCTCAAACTGCTTGATGACTTGCTTAAAATTAAAGGTGTCTGAGATGAATTCAGTGACCAGAACAGCAAGATAAGGTG
species | Vitis vinifera |
transcript | Vv12s0034g01790.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
taatatttgtcttgtacattcaggttgacagaactgaatattgtggttcttttagGTGGTGAAAGGAGAGGTTCCTGTCTCAAACTGCTTGATGACTTGCTTAAAATTAAAGGTGTCTGAGATGAATTCAGTGACCAGAACAGCAAGATAAGGTG
ggttgac putative branch site (score: 4)
ttctttt putative PPT
tgaatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctaattgtccctttattctttatctgaatgttcttgctcaaactataatatttgtcttgtacattcaggttgacagaactgaatattgtggttcttttagGTGGTGAAAGGAGAGGTTCCTGTCTCAAACTGCTTGATGACTTGCTTAAAATTAAAGGTGTCTGAGATGAATTCAGTGACCAGAACAGCAAGATAAGGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - cccttta
- - - - - - - - - - - -ctgaatg
- - - - - - - - - - - - - - - - - - ctcaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cattcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acagaac