1 5' 3' | 2 5' 3' | 3 5' 3' |
...aagatttctttaatgacccaaaactttcattctacatcctggccatttgataaatttttctttcatcatgctttcatctaaaaccatttttttcctgtagGGTGTTGAGCTTGAGTTGAGAAAACTTGAAGGAGCAGTGGAGGCCATCCATGAGAATCTACTCTATCTCAAGAGCCG
species | Vitis vinifera |
transcript | Vv12s0034g01440.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAATTGGAGCAAAGGATTGGGAATCTGTTGCCAGGAAGGAGAAGATTGAG GGTGTTGAGCTTGAGTTGAGAAAACTTGAAGGAGCAGTGGAGGCCATCCATEST: gi|351026894|gb|FQ436547.1|FQ436547
genomic: GAATTGGAGCAAAGGATTGGGAATCTGTTGCCAGGAAGGAGAAGATTGAGgtgacctctt ... tttcctgtagGGTGTTGAGCTTGAGTTGAGAAAACTTGAAGGAGCAGTGGAGGCCATCCAT
EST: GAATTGGAGCAAAGGATTGGGAATCTGTTGCCAGGAAGGAGAAGATTGAG GGTGTTGAGCTTGAGTTGAGAAAAATTGAAGGAGCAGTGGAGGCCATCCATEST: gi|77587717|gb|DV223037.1|DV223037
genomic: GAATTGGAGCAAAGGATTGGGAATCTGTTGCCAGGAAGGAGAAGATTGAGgtgacctctt ... tttcctgtagGGTGTTGAGCTTGAGTTGAGAAAACTTGAAGGAGCAGTGGAGGCCATCCAT
EST: GAATTGGAGCAAAGGATTGGGAATCTGTTGCCAGGAAGGAGAAGATTGAG GGTGTTGAGCTTGAGTTGAGAAAACTTGAAGGAGCAGTGGAGGCCATCCATEST: gi|351016734|gb|FQ424161.1|FQ424161
genomic: GAATTGGAGCAAAGGATTGGGAATCTGTTGCCAGGAAGGAGAAGATTGAGgtgacctctt ... tttcctgtagGGTGTTGAGCTTGAGTTGAGAAAACTTGAAGGAGCAGTGGAGGCCATCCAT
EST: GAATTGGAGCAAAGGATTGGGAATCTGTTGCCAGGAAGGAGAAGATTGAG GGTGTTGAGCTTGAGTTGAGAAAACTTGAAGGAGCAGTGGAGGCCATCCATEST: gi|77581489|gb|DV219683.1|DV219683
genomic: GAATTGGAGCAAAGGATTGGGAATCTGTTGCCAGGAAGGAGAAGATTGAGgtgacctctt ... tttcctgtagGGTGTTGAGCTTGAGTTGAGAAAACTTGAAGGAGCAGTGGAGGCCATCCAT
EST: GAATTGGAGCAAAGGATTGGGAATCTGTTGCCAGGAAGGAGAAGATTGAG GGTGTTGAGCTTGAGTTGAEST: gi|349826899|gb|FQ418990.1|FQ418990
genomic: GAATTGGAGCAAAGGATTGGGAATCTGTTGCCAGGAAGGAGAAGATTGAGgtgacctctt ... tttcctgtagGGTGTTGAGCTTGAGTTGA
EST: GAATTGGAGCANAGGATTGGGAATCTGTTGCCAGGAAGGAGAAGATTGAG GGTGTTGAGCTTGAGTTGAGAAAACTTGAAGGAGCAGTGGAGGCCATCCATEST: gi|351028478|gb|FQ444759.1|FQ444759
genomic: GAATTGGAGCAAAGGATTGGGAATCTGTTGCCAGGAAGGAGAAGATTGAGgtgacctctt ... tttcctgtagGGTGTTGAGCTTGAGTTGAGAAAACTTGAAGGAGCAGTGGAGGCCATCCAT
EST: GAATTGGAGCANAGGATTGGGAATCTGTTGCCAGGAAGGAGAAGATTGAG GGTGTTGAGCTTGAGTTGAGAAAACTTGAAGGAGCAGTGGAGGCCATCCATEST: gi|110390944|gb|EC955893.1|EC955893
genomic: GAATTGGAGCAAAGGATTGGGAATCTGTTGCCAGGAAGGAGAAGATTGAGgtgacctctt ... tttcctgtagGGTGTTGAGCTTGAGTTGAGAAAACTTGAAGGAGCAGTGGAGGCCATCCAT
EST: GAATTGGAGCAAAGGATTGGGAATCTGTTGCCAGGAAGGAGAAGATTGAG GGTGTTGAGCTTGAGTTGAGAAAACTTGAAGGAGCAGTGGAGGCCATCCATEST: gi|351031396|gb|FQ445421.1|FQ445421
genomic: GAATTGGAGCAAAGGATTGGGAATCTGTTGCCAGGAAGGAGAAGATTGAGgtgacctctt ... tttcctgtagGGTGTTGAGCTTGAGTTGAGAAAACTTGAAGGAGCAGTGGAGGCCATCCAT
EST: GAATTGGAGCAAAGGATTGGGAATCTGTTGCCAGGAAGGAGAAGATTGAG GGTGTTGAGCTTGAGTTGAGAAAACTTGAAGGAGCATTGGAGGCCATCCATEST: gi|351034240|gb|FQ448037.1|FQ448037
genomic: GAATTGGAGCAAAGGATTGGGAATCTGTTGCCAGGAAGGAGAAGATTGAGgtgacctctt ... tttcctgtagGGTGTTGAGCTTGAGTTGAGAAAACTTGAAGGAGCAGTGGAGGCCATCCAT
EST: GAATTGGAGCAAAGGATTGGGAATCTGTTGCCAGGAAGGAGAAGATTGAG GGTGTTGAGCTTGAGTTGAGAAAACTTGAAGGAGCAGTGGAGGCCATCCATEST: gi|351014680|gb|FQ437880.1|FQ437880
genomic: GAATTGGAGCAAAGGATTGGGAATCTGTTGCCAGGAAGGAGAAGATTGAGgtgacctctt ... tttcctgtagGGTGTTGAGCTTGAGTTGAGAAAACTTGAAGGAGCAGTGGAGGCCATCCAT
EST: GAATTGGAGCAAAGGATTGGGAATCTGTTGCCAGGAAGGAGAGGATTGAG GGTGTTGAGCTTGAGTTGAGAAAACTTGAAGGAGCAGTGGAGGCCATCCATEST: gi|71877423|gb|DT026478.1|DT026478
genomic: GAATTGGAGCAAAGGATTGGGAATCTGTTGCCAGGAAGGAGAAGATTGAGgtgacctctt ... tttcctgtagGGTGTTGAGCTTGAGTTGAGAAAACTTGAAGGAGCAGTGGAGGCCATCCAT
EST: GAATTGGAGCAAAGGATTGGGAATCTGTTGCCAGGAAGGAGAAGATTGAG GGTGTTGAGCTTGAGTTGAGAAAACTTGAAGGAGCAGTGGAGGCCATCCATEST: gi|351029626|gb|FQ427466.1|FQ427466
genomic: GAATTGGAGCAAAGGATTGGGAATCTGTTGCCAGGAAGGAGAAGATTGAGgtgacctctt ... tttcctgtagGGTGTTGAGCTTGAGTTGAGAAAACTTGAAGGAGCAGTGGAGGCCATCCAT
EST: GAATTGGAGCAAAGGATTGGGAATCTGTTGCCAGGAAGGAGAAGATTGAG GGTGTTGAGCTTGAGTTGAGAAAACTTGAAGGAGCAGTGGAGGCCATCCATEST: gi|351017782|gb|FQ436135.1|FQ436135
genomic: GAATTGGAGCAAAGGATTGGGAATCTGTTGCCAGGAAGGAGAAGATTGAGgtgacctctt ... tttcctgtagGGTGTTGAGCTTGAGTTGAGAAAACTTGAAGGAGCAGTGGAGGCCATCCAT
EST: GAATTGGAGCAAAGGATTGGGAATCTGTTGCCAGGAAGGAGAAGATTGAG GGTGTTGAGCTTGAGTTGAGAAAACTTGAAGGAGCAGTGGAGGCCATCCAT
genomic: GAATTGGAGCAAAGGATTGGGAATCTGTTGCCAGGAAGGAGAAGATTGAGgtgacctctt ... tttcctgtagGGTGTTGAGCTTGAGTTGAGAAAACTTGAAGGAGCAGTGGAGGCCATCCAT
tttgataaatttttctttcatcatgctttcatctaaaaccatttttttcctgtagGGTGTTGAGCTTGAGTTGAGAAAACTTGAAGGAGCAGTGGAGGCCATCCATGAGAATCTACTCTATCTCAAGAGCCG
atctaaa putative branch site (score: 3)
ccatttttttcctgt CT-rich tract
taaatttttctttcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagatttctttaatgacccaaaactttcattctacatcctggccatttgataaatttttctttcatcatgctttcatctaaaaccatttttttcctgtagGGTGTTGAGCTTGAGTTGAGAAAACTTGAAGGAGCAGTGGAGGCCATCCATGAGAATCTACTCTATCTCAAGAGCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - -ccaaaac
- - - - - - - - - - - - - - - - - - -cctggcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaccat