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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttttctttcaagccgagaattgcattttcttttatcttgttctctttttgaataaagaaaagatcaacctaaaagcaaatgttctcaacagGTGGTTGCTCTATCAATGCACCAGGCAGGTGCTTCTAACTGGACTGATGTGGTGTTTGGTGTTCTTTCGGATCCAATAAATGTTCCAATAAATCCAGTGT

Basic information

species Vitis vinifera
transcript Vv12s0034g01420.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0034g01420.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA15G05280.3 (Glycine max), 3'ss of exon 2
gttttctttcaagccgagaattgcattttcttttatcttgttctcttt-ttgaataaa-gaaaagatcaacctaaaagcaaat-gttctcaacagGTGGTTGCTCTATCAATGCACCAGGCAGGTGCTTCTAACTGGACTGATGTGGTGTTTGGTGTTCTTTCGGATCCAATAAATGTTCCAATAAATCCAGTGT
||||  |||    |       ||  || | ||||   || |||  |    ||  ||   | | | |    | || |||| | |    || ||||||||| |   || || ||||||||      | |  ||||||| ||||| ||||||||||||||||| || |||||||| |||| | |||||||||||||||
gtttcgttttgcccttgcttctgttttatatttttcatttttccttagactgtttaggcgtagaaagtggcttataagctacttaaccttaacagGTGGCTCTCCTGTCCATGCACCAAAGTATTACACCTAACTGTACTGACGTGGTGTTTGGTGTTCTCTCTGATCCAATGAATGCTTCAATAAATCCAGTGT

upper sequence: Vv12s0034g01420.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA08G19740.1 (Glycine max), 3'ss of exon 2
gttttctttcaagccgagaattgcattttcttttatcttgttctctttttgaataaagaaaagatcaacctaaaagcaaat-gttctcaacagGTGGTTGCTCTATCAATGCACCAGGCAGGTGCTTCTAACTGGACTGATGTGGTGTTTGGTGTTCTTTCGGATCCAATAAATGTTCCAATAAATCCAGTGT
|||||  ||    ||  |  |||  || |  | | | || || ||  |  || |    |         | || |||| | |    || ||||||||| |   || || ||||||||      | |  ||||||| ||||| ||||||||||||||||| || |||||||| |||  | |||||||||||||||
gttttggttttgcccttgc-ttgtgttcttatatttttttttttccctaagactgtttaggcatatggcttataagctatttaaccttaacagGTGGCTCTCCTGTCCATGCACCAAAGTATTCCACCTAACTGTACTGACGTGGTGTTTGGTGTTCTCTCTGATCCAATGAATTCTTCAATAAATCCAGTGT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgttctctttttgaataaagaaaagatcaacctaaaagcaaatgttctcaacagGTGGTTGCTCTATCAATGCACCAGGCAGGTGCTTCTAACTGGACTGATGTGGTGTTTGGTGTTCTTTCGGATCCAATAAATGTTCCAATAAATCCAGTGT
                              acctaaa  putative branch site (score: 3)
                                           tgttctc  putative PPT
        tttttgaataaagaaa  TA-rich tract