Sequence
atgc intronic sequence ATGC exonic sequencegttggcacgtcaagggacaaaaatgcacattctttgataagaaatacattttcttttatggtatcaggttaaattttccagatgcagtgatgatttttatacatttgtttcagCTGTTTGACCGGAAATTTGTGGATGCGGTTTTAAATGAGTGGCAGAAGACAATGATGGATTTGCCTGCTGGGCTCCGTCAAGCTTATGAAATG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv12s0034g01370.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA08G19780.1 (Glycine max), 3'ss of exon 2
-----------------gttggcacgtcaagggacaaaaatgcac-attctttgataagaaatacattttcttttatggtatcaggttaaattttccagatgcagtgatgatttttatacatttgtttcagCTGTTTGACCGGAAATTTGTGGATGCGGTTTTAAATGAGTGGCAGAAGACAATGATGGATTTGCCTGCTGGGCTCCGTCAAGCTTATGAAATG
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gttagaaatattatttattcattttatacaagaataagttttttttacccctttatcaaacgtacaactt-ttttatggctttaatttgatgtttcctaaagaaatgaaattcattctgtatttgttgaagCTATTTGACCGAAAATTTGTGGATGCTGTGTTAAATGAGTGGCAAAAGACTATGATGGATTTGCCTGCTGGGCTTCGGCAAGCTTATGAAATG
upper sequence: Vv12s0034g01370.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA15G05240.1 (Glycine max), 3'ss of exon 2
------------------gttggcacgtcaagggacaaaaatgcacattctttgataagaaatacattttcttttatggtatcaggttaaattttccagatgcagtgatgatttttatacatttgtttcagCTGTTTGACCGGAAATTTGTGGATGCGGTTTTAAATGAGTGGCAGAAGACAATGATGGATTTGCCTGCTGGGCTCCGTCAAGCTTATGAAATG
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gttagaattactattattttttttatatataagaataggtttttttacccctttatgaaacgtacaactt--ttaattgctttaatttgatgtttcctaaagaaatgaaattcattatgtctttgttgaagCTATTTGACCGAAAATTTGTGGATGCTGTGTTAAATGAGTGGCAAAAGACTATGATGGATTTGCCTGCTGGGCTTCGGCAAGCTTATGAAATG
upper sequence: Vv12s0034g01370.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT5G24690.1 (Arabidopsis thaliana), 3'ss of exon 2
gttggcacgtcaagggacaaaaatgcacattctttgataagaaat--acattttcttttatggtatcaggttaaattttccagatgcagtgatgatttttatacatttgtttcagCTGTTTGACCGGAAATTTGTGGATGCGGTTTTAAATGAGTGGCAGAAGACAATGATGGATTTGCCTGCTGGGCTCCGTCAAGCTTATGAAATG
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----------------------------------gtatgagaacttgatatttttgttcatg-tattttattgtcatggtgtcacgcagtaatggcatatatgttattgtc-cagATTTTTGATAGGAAATTCGTTGATGCTGTGTTGAATGAATGGCAAAAAACAATGATGGATTTACCTGCCGGTCTCCGTCAAGCATATGAAATG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tggtatcaggttaaattttccagatgcagtgatgatttttatacatttgtttcagCTGTTTGACCGGAAATTTGTGGATGCGGTTTTAAATGAGTGGCAGAAGACAATGATGGATTTGCCTGCTGGGCTCCGTCAAGCTTATGAAATG
tttgtttc CT-rich tract
atgatttttatacatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttggcacgtcaagggacaaaaatgcacattctttgataagaaatacattttcttttatggtatcaggttaaattttccagatgcagtgatgatttttatacatttgtttcagCTGTTTGACCGGAAATTTGTGGATGCGGTTTTAAATGAGTGGCAGAAGACAATGATGGATTTGCCTGCTGGGCTCCGTCAAGCTTATGAAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT