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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttagtgccttcgtagaatatattaatgtttcatgggggggtttgttgataaaaaagataagtttatgtaatgcagaagagcagaatgtgccattgaatggttttaatcgatcattattattgtttttctaactttttcataggatttatatcattttgcagTGCTGGCTTGCTCTGGAAGATTGTATGTGTTCTAAAGTGATTCCTTGCGTTCTATGGCATGGCATACGGTTCTGGTTGTATATGCATCCAAAG

Basic information

species Vitis vinifera
transcript Vv12s0028g03810.t01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71856383|gb|DT005438.1|DT005438
EST:     ACCAATAGCATGCCGCTTGCTTGGAAAGTAGGG-TTACCTTTGTCAGAAG                         TGCTGGCTTGCTCTGGAAGATTGTATGTGTTCTAAAGTGAT
genomic: ACAAATAGCATGCCGCTTGCTTGGAA-GTAGGGGTTACCTTTGTCAGAAGgtatttagtg ... cattttgcagTGCTGGCTTGCTCTGGAAGATTGTATGTGTTCTAAAGTGAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcgatcattattattgtttttctaactttttcataggatttatatcattttgcagTGCTGGCTTGCTCTGGAAGATTGTATGTGTTCTAAAGTGATTCCTTGCGTTCTATGGCATGGCATACGGTTCTGGTTGTATATGCATCCAAAG
                   ttctaac  putative branch site (score: 1)
                                            tcatttt  putative PPT
      attattattgtttttc  TA-rich tract