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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatccaccacactgctcctctatctcagtatctcaattttcttcaatattcttgcgatctaaagaatctaagaactggggatttcatgttttcagTATTTTCTCGGCAATCTCCCAGCTGGGACTTTTATTTCTCGGTTTGTCGTTCTTCTCAAACTCACTGTACCAAAG

Basic information

species Vitis vinifera
transcript Vv12s0028g03190.t01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71871574|gb|DT020629.1|DT020629
EST:     GGTTCTGTTTGCTTCCTCTCCTCCTGTTTTACCAGAGGAATAAGCTTTAG                         TATTTTCTCGGCAATCTCCCAGCTGGGACTTTTATTTCTCGGTTTGTCGTT
genomic: GGTTCTGTTTGCTTCCTCTCCTCCTGTTTTACCAGAGGAATAAGCTTTAGgtatccacca ... atgttttcagTATTTTCTCGGCAATCTCCCAGCTGGGACTTTTATTTCTCGGTTTGTCGTT
EST: gi|110382935|gb|EC947267.1|EC947267
EST:     GGTTCTGTTTGCTTCCTCTCCTCCTGTTTTACCAGAGGAATAAGCTTTAG                         TATTTTCTCGGCAATCTCCCAGCTGGGACTTTTATTTCTCGGTTTGTCGTT
genomic: GGTTCTGTTTGCTTCCTCTCCTCCTGTTTTACCAGAGGAATAAGCTTTAGgtatccacca ... atgttttcagTATTTTCTCGGCAATCTCCCAGCTGGGACTTTTATTTCTCGGTTTGTCGTT
EST: gi|77582836|gb|DV220398.1|DV220398
EST:     GGTTCTGTTTGCTTCCTCTCCTCCTGTTTTACCAGAGGAATAAGCTTTAG                         TATTTTCTCGGCAATCTCCCAGCTGGGACTTTTATTTCTCGGTTTGTCGTT
genomic: GGTTCTGTTTGCTTCCTCTCCTCCTGTTTTACCAGAGGAATAAGCTTTAGgtatccacca ... atgttttcagTATTTTCTCGGCAATCTCCCAGCTGGGACTTTTATTTCTCGGTTTGTCGTT
EST: gi|71870499|gb|DT019554.1|DT019554
EST:     GCTCTGTTTGCTTCCTCTCCTCCTGTTTTACCAGAGGAAATA-GCTTTAG                         TATTTTCTCGGCAATCTCCCAGCTGGGACT
genomic: GTTCTGTTTGCTTCCTCTCCTCCTGTTTTACCAGAGGAA-TAAGCTTTAGgtatccacca ... atgttttcagTATTTTCTCGGCAATCTCCCAGCTGGGACT
EST: gi|71859249|gb|DT008304.1|DT008304
EST:     GGTTCTGTTTGCTTCCTCTCCTCCTGTTTTACCAGAGGAATAAGCTTTAG                         TATTTTCTCGGCAATCTCCCAGCTGGGACTTTTATTTCTCGGTTTGTCGTT
genomic: GGTTCTGTTTGCTTCCTCTCCTCCTGTTTTACCAGAGGAATAAGCTTTAGgtatccacca ... atgttttcagTATTTTCTCGGCAATCTCCCAGCTGGGACTTTTATTTCTCGGTTTGTCGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttcaatattcttgcgatctaaagaatctaagaactggggatttcatgttttcagTATTTTCTCGGCAATCTCCCAGCTGGGACTTTTATTTCTCGGTTTGTCGTTCTTCTCAAACTCACTGTACCAAAG
                atctaaa  putative branch site (score: 3)
                                              tgttttc  putative PPT
     atattctt  TA-rich tract