1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gtgtaattcctgtcaattatttgcatcaaacctgattaatttccataacttcaattctgaccactagtgtgttctcactttctatcccatatatttgcagGCATACAATGTTTCGCTAATGCTGTGGCGTGATGCACTTCTGGTGGATCTAGTAAAAAAGAATGGCACACGAGTTCTAAAACTCGACTCTATCAACAGCG
species | Vitis vinifera |
transcript | Vv12s0028g01360.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTGCCTACTCATTGAGAACGTGGCAAGGCCTCTCCACATTCAAATTCCCA GCATACAATGTTTCGCTAATGCTGEST: gi|30324102|gb|CD007364.1|CD007364
genomic: CTGCCTACTCATTGAGAACGTGGCAAGGCCTCTCCACATTCAAATTCCCAgtgagactct ... atatttgcagGCATACAATGTTTCGCTAATGCTG
EST: CTGCCTACTCATTGAGAACGTGGCAAGGCCTCTCCACATTCAAATTCCCA GCATACAATGTTACGCTAATGCTGTGGCGTGATGCACTTCTGGTGGATCTAEST: gi|32267841|gb|CD717000.1|CD717000
genomic: CTGCCTACTCATTGAGAACGTGGCAAGGCCTCTCCACATTCAAATTCCCAgtgagactct ... atatttgcagGCATACAATGTTTCGCTAATGCTGTGGCGTGATGCACTTCTGGTGGATCTA
EST: CTGCCTACTCATTGAGAACGTGGCAAGGCCTCTCCACATTCAAATTCCCA GCATACAATGTTACGCTAATGCTGTGGCGTGATGCACTTCTGGTGGATCTAEST: gi|32270623|gb|CD719782.1|CD719782
genomic: CTGCCTACTCATTGAGAACGTGGCAAGGCCTCTCCACATTCAAATTCCCAgtgagactct ... atatttgcagGCATACAATGTTTCGCTAATGCTGTGGCGTGATGCACTTCTGGTGGATCTA
EST: CTGCCTACTCATTGAGAACGTGGCAAGGCCTCTCCACATTCAAATTCCCA GCATACAATGTTACGCTAATGCTGTGGCGTGATGCACTTCTGGTGGATCTAEST: gi|28963567|gb|CB342600.1|CB342600
genomic: CTGCCTACTCATTGAGAACGTGGCAAGGCCTCTCCACATTCAAATTCCCAgtgagactct ... atatttgcagGCATACAATGTTTCGCTAATGCTGTGGCGTGATGCACTTCTGGTGGATCTA
EST: CTGCCTACTCATTGAGAACGTGGCAAGGCCTCTCCACATTCAAATTCCCA GCATACAATGTTTCGCTAATGCTGTGGCGTGATGCACTTCTGGTGGATCTAEST: gi|30326328|gb|CD009590.1|CD009590
genomic: CTGCCTACTCATTGAGAACGTGGCAAGGCCTCTCCACATTCAAATTCCCAgtgagactct ... atatttgcagGCATACAATGTTTCGCTAATGCTGTGGCGTGATGCACTTCTGGTGGATCTA
EST: CTGCCTACTCATTGAGAACGTGGCAAGGCCTCTCCACATTCAAATTCCCA GCATACAATGTTACGCTAATGCTGTGGCGTGATGCACTTCTGGTGGATCTAEST: gi|32249128|gb|CD714947.1|CD714947
genomic: CTGCCTACTCATTGAGAACGTGGCAAGGCCTCTCCACATTCAAATTCCCAgtgagactct ... atatttgcagGCATACAATGTTTCGCTAATGCTGTGGCGTGATGCACTTCTGGTGGATCTA
EST: CTGCCTACTCATTGAGAACGTGGCAAGGCCTCTCCACATTCAAATTCCCA GCATACAATGTTACGCTAATGCTGTGGCGTGATGCACTTCTGGTGGATCTAEST: gi|30327945|gb|CD011207.1|CD011207
genomic: CTGCCTACTCATTGAGAACGTGGCAAGGCCTCTCCACATTCAAATTCCCAgtgagactct ... atatttgcagGCATACAATGTTTCGCTAATGCTGTGGCGTGATGCACTTCTGGTGGATCTA
EST: CTGCCTACTCATTGAGAACGTGGCAAGGCCTCTCCACATTCAAATTCCCA GCATACAATGTTACGCTAATGCTGTGGCGTGATGCACTTCTGGTGGATCTAEST: gi|32272513|gb|CD721672.1|CD721672
genomic: CTGCCTACTCATTGAGAACGTGGCAAGGCCTCTCCACATTCAAATTCCCAgtgagactct ... atatttgcagGCATACAATGTTTCGCTAATGCTGTGGCGTGATGCACTTCTGGTGGATCTA
EST: CTGCCTACTCATTGAGAACGTGGCAAGGCCTCTCCACATTCAAATTCCCA GCATACAATGTTACGCTAATGCTGTGGCGTGATGCACTTCTGGTGGATCTA
genomic: CTGCCTACTCATTGAGAACGTGGCAAGGCCTCTCCACATTCAAATTCCCAgtgagactct ... atatttgcagGCATACAATGTTTCGCTAATGCTGTGGCGTGATGCACTTCTGGTGGATCTA
taacttcaattctgaccactagtgtgttctcactttctatcccatatatttgcagGCATACAATGTTTCGCTAATGCTGTGGCGTGATGCACTTCTGGTGGATCTAGTAAAAAAGAATGGCACACGAGTTCTAAAACTCGACTCTATCAACAGCG
ttctcac putative branch site (score: 2)
atatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtaattcctgtcaattatttgcatcaaacctgattaatttccataacttcaattctgaccactagtgtgttctcactttctatcccatatatttgcagGCATACAATGTTTCGCTAATGCTGTGGCGTGATGCACTTCTGGTGGATCTAGTAAAAAAGAATGGCACACGAGTTCTAAAACTCGACTCTATCAACAGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - cctgtca
- - - - - - - - - - - - - caaacct
- - - - - - - - - - - - - - - - - - - - - ccataac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgacca