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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagggaagggtttcatttaagttcgtttctttttcctgcatttgatgccatgaaaagttgagtatttcaatttagtcggcatgttctcctcttgcagTTCTCTTTTGGCGCTATAAATTCTGAAACTCTACTAGGAAG

Basic information

species Vitis vinifera
transcript Vv12s0028g01100.t01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26265252|gb|CA816315.1|CA816315
EST:     TAGATGTTGGTATAACCTTGTTTGATACTGCTGAAGTTTATGGCTCAAGG                         TTCTCTTTTGGCGCTATAAATTCTGAAACTCTACTTGGAAG
genomic: TAGATGTTGGTATAACCTTGTTTGATACTGCTGAAGTTTATGGCTCAAGGgtagggaagg ... cctcttgcagTTCTCTTTTGGCGCTATAAATTCTGAAACTCTACTAGGAAG
EST: gi|110730925|gb|EE108561.1|EE108561
EST:     TAGATGTTGGTATAACCTTGTTTGATACTGCTGAAGTTTATGGCTCAAGG                         TTCTCTTTTGGCGCTATAAATTCTGAAACTCTACTAGGAAG
genomic: TAGATGTTGGTATAACCTTGTTTGATACTGCTGAAGTTTATGGCTCAAGGgtagggaagg ... cctcttgcagTTCTCTTTTGGCGCTATAAATTCTGAAACTCTACTAGGAAG
EST: gi|37184287|gb|CF603641.1|CF603641
EST:     TAGATGTTGGTATAACCTTGTTTGATACTGCTGAAGTTTATGGCTCAAGG                         TTCTCTTTTGGCGCTATAAATTCTGAAACTCTACTTGGAAG
genomic: TAGATGTTGGTATAACCTTGTTTGATACTGCTGAAGTTTATGGCTCAAGGgtagggaagg ... cctcttgcagTTCTCTTTTGGCGCTATAAATTCTGAAACTCTACTAGGAAG
EST: gi|110381894|gb|EC937946.1|EC937946
EST:     TAGATGTTGGTATAACCTTGTTTGATACTGCTGAAGTTTATGGCTCAAGG                         TTCTCTTTTGGCGCTATAAATTCTGAAACTCTACTTGGAAG
genomic: TAGATGTTGGTATAACCTTGTTTGATACTGCTGAAGTTTATGGCTCAAGGgtagggaagg ... cctcttgcagTTCTCTTTTGGCGCTATAAATTCTGAAACTCTACTAGGAAG
EST: gi|26263992|gb|CA815055.1|CA815055
EST:     TAGATGTTGGTATAACCTTGTTTGATACTGCTGAAGTTTATGGCTCAAGG                         TTCTCTTTTGGCGCTATAAATTCTGAAACTCTACTTGGAAG
genomic: TAGATGTTGGTATAACCTTGTTTGATACTGCTGAAGTTTATGGCTCAAGGgtagggaagg ... cctcttgcagTTCTCTTTTGGCGCTATAAATTCTGAAACTCTACTAGGAAG
EST: gi|110720549|gb|EE096568.1|EE096568
EST:     TAGATGTTGGTATAACCTTGTTTGATACTGCTGAAGTTTATGGCTCAAGG                         TTCTCTTTTGGCGCTATAAATTCTGAAACTCTACTAGGAAG
genomic: TAGATGTTGGTATAACCTTGTTTGATACTGCTGAAGTTTATGGCTCAAGGgtagggaagg ... cctcttgcagTTCTCTTTTGGCGCTATAAATTCTGAAACTCTACTAGGAAG
EST: gi|110370834|gb|EC934386.1|EC934386
EST:     TAGATGTTGGTATAACCTTGTTTGATACTGCTGAAGTTTATGGCTCAAGG                         TTCTCTTTTGGCGCTATAAATTCTGAAACTCTACTTGGAAG
genomic: TAGATGTTGGTATAACCTTGTTTGATACTGCTGAAGTTTATGGCTCAAGGgtagggaagg ... cctcttgcagTTCTCTTTTGGCGCTATAAATTCTGAAACTCTACTAGGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgatgccatgaaaagttgagtatttcaatttagtcggcatgttctcctcttgcagTTCTCTTTTGGCGCTATAAATTCTGAAACTCTACTAGGAAG
 atttgat  putative branch site (score: 5)
                                     catgttctcctctt  putative PPT
                  agtatttcaattta  TA-rich tract