1 5' 3' | 2 5' 3' |
...gacatttcaatattttcatcctatattgcctcgtagaaatctgtagattgcatagaagcatgtcatctcatagctctcttccatggttgtatgaatgcagAAGTTATTACAGATGCACCACTCAGAAATGCACTGTGAAGAAACGAGTTGAAAGATCATTTCAAGATCCCTCCATTGTGATCACTACATATGAAGGACAG
species | Vitis vinifera |
transcript | Vv12s0028g00270.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGATGGAGAAAATACGGACAGAAGGCAGTCAAGAATAGCCCTTACCCAAG AAGTTATTACAGATGCACCACTCAGAAATGCACTGTGAAGAAACGAGTTGAEST: gi|30325007|gb|CD008269.1|CD008269
genomic: AGATGGAGAAAATACGGACAGAAGGCAGTCAAGAATAGCCCTTACCCAAGgttttacttc ... atgaatgcagAAGTTATTACAGATGCACCACTCAGAAATGCACTGTGAAGAAACGAGTTGA
EST: AGATGGAGAAAATACGGACAGAAGGCAGTCAAGAATAGCCCTTACCCAAG AAGTTATTACAGATGCACCACTCAGAAATGCACTGTGAAGAAACGAGTTGAEST: gi|30323621|gb|CD006883.1|CD006883
genomic: AGATGGAGAAAATACGGACAGAAGGCAGTCAAGAATAGCCCTTACCCAAGgttttacttc ... atgaatgcagAAGTTATTACAGATGCACCACTCAGAAATGCACTGTGAAGAAACGAGTTGA
EST: AGATGGAGAAAATACGGACAGAAGGCAGTCAAGAATAGCCCTTACCCAAG AAGTTATTACAGATGCACCACTCAGAAATGCACTGTGAAGAAACGAGTTGA
genomic: AGATGGAGAAAATACGGACAGAAGGCAGTCAAGAATAGCCCTTACCCAAGgttttacttc ... atgaatgcagAAGTTATTACAGATGCACCACTCAGAAATGCACTGTGAAGAAACGAGTTGA
gattgcatagaagcatgtcatctcatagctctcttccatggttgtatgaatgcagAAGTTATTACAGATGCACCACTCAGAAATGCACTGTGAAGAAACGAGTTGAAAGATCATTTCAAGATCCCTCCATTGTGATCACTACATATGAAGGACAG
tatgaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gacatttcaatattttcatcctatattgcctcgtagaaatctgtagattgcatagaagcatgtcatctcatagctctcttccatggttgtatgaatgcagAAGTTATTACAGATGCACCACTCAGAAATGCACTGTGAAGAAACGAGTTGAAAGATCATTTCAAGATCCCTCCATTGTGATCACTACATATGAAGGACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - -tcatcct
- - - - - - - - - - - - - tgcctcg
- - - - - - - - - - - - - - - - - agaaatc
- - - - - - - - - - - - - - - - - - - - - - - - tgcatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatgtc