1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...cagcaatgttttgtttggcctgcttgattatttttctttatatttagaaattgtgcctcataatttacagtattgattaattttatgtgtgtttaagcagTTTAGGAAAGCAGTTGAGCTGAAGAAGAGTAGAGGAGAAAATGCCTTTTTATGATTGTATGCTTCTGTTGAAGCCACATGTTAACAAGGAAAGTTTGATG
species | Vitis vinifera |
transcript | Vv11s0149g00070.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGGACTCCTTTGAAACATCCAAGCAAGTTAATCAACCTGCCTTGAGTAAT TTTAGGAAAGCAGTTGAGCTGAAGAAGAGTAGAGGAGAAAATGCCTTTTTAEST: gi|110688268|gb|EE066628.1|EE066628
genomic: TGGACTCCTTTGAAACATCCAAGCAAGTTAATCAACCTGCCTTGAGTAATgtaagtatca ... gtttaagcagTTTAGGAAAGCAGTTGAGCTGAAGAAGAGTAGAGGAGAAAATGCCTTTTTA
EST: TGGACTCCTTTGAAACATCCAAGCAAGTTAATCAACCTGCCTTGAGTAAT TTTAGGAAAGCAGTTGAGCTGAAGAAGAGTAGAGGAGAAAATGCCTTTTTAEST: gi|110693922|gb|EE070579.1|EE070579
genomic: TGGACTCCTTTGAAACATCCAAGCAAGTTAATCAACCTGCCTTGAGTAATgtaagtatca ... gtttaagcagTTTAGGAAAGCAGTTGAGCTGAAGAAGAGTAGAGGAGAAAATGCCTTTTTA
EST: TGGACTCCTTTGAAACATCCAAGCAAGTTAATCAACCTGCCTTGAGTAAT TTTAGGAAAGCAGTTGAGCTGAAGAAGAGTAGAGGAGAAAATGCCTTTTTA
genomic: TGGACTCCTTTGAAACATCCAAGCAAGTTAATCAACCTGCCTTGAGTAATgtaagtatca ... gtttaagcagTTTAGGAAAGCAGTTGAGCTGAAGAAGAGTAGAGGAGAAAATGCCTTTTTA
agaaattgtgcctcataatttacagtattgattaattttatgtgtgtttaagcagTTTAGGAAAGCAGTTGAGCTGAAGAAGAGTAGAGGAGAAAATGCCTTTTTATGATTGTATGCTTCTGTTGAAGCCACATGTTAACAAGGAAAGTTTGATG
gattaat putative branch site (score: 3)
tcataatttacagtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cagcaatgttttgtttggcctgcttgattatttttctttatatttagaaattgtgcctcataatttacagtattgattaattttatgtgtgtttaagcagTTTAGGAAAGCAGTTGAGCTGAAGAAGAGTAGAGGAGAAAATGCCTTTTTATGATTGTATGCTTCTGTTGAAGCCACATGTTAACAAGGAAAGTTTGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- -caatgtt
- - - - - -tgtttgg
- - - - - - - - - cctgctt
- - - - - - - - - - - - - - - - - - - - - - -agaaatt
- - - - - - - - - - - - - - - - - - - - - - - - - - -tgcctca