1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaacagaaaattacgaatacattctcattggtttttgttttttcccttggggatgacattgtttttcccctttttaattcgtttttaccgtttttctctgtgctgaaaacaatccagCTCGAAGAAATCTGCGAAGGGGAAGAGGCCTGGGAAGGGTGGAAACCGGTTCTGGAAGAGCATTGGCTTAGGGTTTAAGACACCCCGAGACGCTATTGAA
species | Vitis vinifera |
transcript | Vv11s0118g00680.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACCGAGAAGGCATTTCTGAAGCAACCCAAAGTGTTTTTATG CTCGAAGAAATCTGCGAAGGGGAAGAGGCCTGGGAAGGGTGGAAACCGGTTEST: gi|71878876|gb|DT027931.1|DT027931
genomic: ACCGAGAAGGCATTTCTGAAGCAACCCAAAGTGTTTTTATGgtaacagaaa ... aacaatccagCTCGAAGAAATCTGCGAAGGGGAAGAGGCCTGGGAAGGGTGGAAACCGGTT
EST: ACCGAGAAGGCATTTCTGAAGCAACCCAAAGTGTTTTTATG CTCGAAGAAATCTGCGAAGGGGAAGAGGCCTGGGAAGGGTGGAAACCGGTTEST: gi|71879179|gb|DT028234.1|DT028234
genomic: ACCGAGAAGGCATTTCTGAAGCAACCCAAAGTGTTTTTATGgtaacagaaa ... aacaatccagCTCGAAGAAATCTGCGAAGGGGAAGAGGCCTGGGAAGGGTGGAAACCGGTT
EST: ACCGAGAAGGCATTTCTGAAGCAACCCAAAGTGTTTTTATG CTCGAAGAAATCTGCGAAGGGGAAGAGGCCTGGGAAGGGTGGAAACCGGTTEST: gi|71871214|gb|DT020269.1|DT020269
genomic: ACCGAGAAGGCATTTCTGAAGCAACCCAAAGTGTTTTTATGgtaacagaaa ... aacaatccagCTCGAAGAAATCTGCGAAGGGGAAGAGGCCTGGGAAGGGTGGAAACCGGTT
EST: ACCGAGAAGGCATTTCTGAAGCAACCCAAAGTGTTTTTATG CTCGAAGAAATCTGCGAAGGGGAAGAGGCCTGGGAAGGGTGGAAACCGGTT
genomic: ACCGAGAAGGCATTTCTGAAGCAACCCAAAGTGTTTTTATGgtaacagaaa ... aacaatccagCTCGAAGAAATCTGCGAAGGGGAAGAGGCCTGGGAAGGGTGGAAACCGGTT
ttttcccctttttaattcgtttttaccgtttttctctgtgctgaaaacaatccagCTCGAAGAAATCTGCGAAGGGGAAGAGGCCTGGGAAGGGTGGAAACCGGTTCTGGAAGAGCATTGGCTTAGGGTTTAAGACACCCCGAGACGCTATTGAA
ttttaat putative branch site (score: 3)
tttttaattcgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacagaaaattacgaatacattctcattggtttttgttttttcccttggggatgacattgtttttcccctttttaattcgtttttaccgtttttctctgtgctgaaaacaatccagCTCGAAGAAATCTGCGAAGGGGAAGAGGCCTGGGAAGGGTGGAAACCGGTTCTGGAAGAGCATTGGCTTAGGGTTTAAGACACCCCGAGACGCTATTGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA