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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgaaatttttttccacatactaataaaaaccgaattcctctttatcataatttctctttgactcatgttcttcattgcaatctgcagGCCAATAACAGGAGCTTCCATGAACCCTGCTAGGAGCATAGGCCCGGCACTTGTCTCAATGGAGTTTGACTGCCTTTGGATCTACATTGTGGCTCCCATT

Basic information

species Vitis vinifera
transcript Vv11s0078g00490.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0078g00490.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: LOC_Os05g11560.1 (Oryza sativa), 3'ss of exon 3
---gta-atgaaat-ttttttccacatactaataaaaaccgaattcctctttatcataatttctctttgac--tcatgttc--ttcattgcaatctgcagGCCAATAACAGGAGCTTCCATGAACCCTGCTAGGAGCATAGGCCCGGCACTTGTCTCAATGGAGTTTGACTGCCTTTGGATCTACATTGTGGCTCCCATT
   ||| |||   | || | ||   ||  |      |  |  ||     ||| |   | ||  ||  ||||  | || |||  ||      |||||||||||||||| ||||||| ||||||||||| || |||| ||| || |||||  |  ||        || |  | |  | ||| | ||||| |  |  ||  ||
atggtacatgctctattctctctgtatggtttagctagtcatatatggatttcttcaatttagtcaatgacaataatattcaattggacataatctgcagGCCAATATCAGGAGCGTCCATGAACCCGGCCAGGACCATCGGACCGGCGATCATCCTCGGCCGGTATACCGGTATCTGGGTGTACATCGCCGGCCCGGTT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattcctctttatcataatttctctttgactcatgttcttcattgcaatctgcagGCCAATAACAGGAGCTTCCATGAACCCTGCTAGGAGCATAGGCCCGGCACTTGTCTCAATGGAGTTTGACTGCCTTTGGATCTACATTGTGGCTCCCATT
                       ctttgac  putative branch site (score: 4)
      tctttatcataattt  TA-rich tract