Sequence
atgc intronic sequence ATGC exonic sequencegtatgtctactaacattttaagatattgttctttgcttatgtatgttgaaattgttgttcttggaaaacatttgatgagaaacaatgtgctgtagacctctgatgtttctgattttgaatctgaagATACATGGAGACTTCGTCCTTGTTACTGGAGATACAGTAAGCAACATGTTGCTTACACAGGCACTTCAAGAACATAAGGGTAGAAGGAAGAAGGATAATA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0065g01160.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA03G40300.1 (Glycine max), 3'ss of exon 2
gtatgtctactaacattttaagatattgttctttgcttatgtatgttgaaattgttgttcttggaaaacatttgatgagaaacaatgtgctgtagacctctgatgtttctgattttgaatctgaagATACATGGAGACTTCGTCCTTGTTACTGGAGATACAGTAAGCAACATGTTGCTTACACAGGCACTTCAAGAACATAAGGGTAGAAGGAAGAAGGATAATA
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--atttttgctattttcaaaacatgctgctgtttgtcactgtccg----agtagtgatccttaa-------ttgttg--------tatacta-acacttttgaa----ttgttttttacgttgaagATACATGGAGACTTTGTCCTTATCAGTGGAGATACTGTAAGCAATATGTCGCTTACTCAGGCACTTCTAGAGCATAAAGAGAGGAAGAAGAAAGATAGTA
upper sequence: Vv11s0065g01160.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA19G42910.1 (Glycine max), 3'ss of exon 2
gtatgtctactaacattttaagatattgttctttgcttatgtatgttgaaattgttgttcttggaaaacatttgatgagaaacaatgtgctgtagacctctgatgtttctgattttgaatctgaagATACATGGAGACTTCGTCCTTGTTACTGGAGATACAGTAAGCAACATGTTGCTTACACAGGCACTTCAAGAACATAAGGGTAGAAGGAAGAAGGATAATA
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-tacttttaccatttttaaaatatgctgctatttgtcactgtctgatta----gttatcctt---aagctct------------gtatacta-acacttttgaattgtttgttcat-----tgaagATACATGGAGACTTTGTCCTTATCAGTGGAGATACTGTAAGCAATATGTCTCTTACTCAAGCACTTCTAGAGCATAAAGAAAGGAAGAAGAAAGATAGTA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgatgagaaacaatgtgctgtagacctctgatgtttctgattttgaatctgaagATACATGGAGACTTCGTCCTTGTTACTGGAGATACAGTAAGCAACATGTTGCTTACACAGGCACTTCAAGAACATAAGGGTAGAAGGAAGAAGGATAATA
ttctgat putative branch site (score: 3)
attttgaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgtctactaacattttaagatattgttctttgcttatgtatgttgaaattgttgttcttggaaaacatttgatgagaaacaatgtgctgtagacctctgatgtttctgattttgaatctgaagATACATGGAGACTTCGTCCTTGTTACTGGAGATACAGTAAGCAACATGTTGCTTACACAGGCACTTCAAGAACATAAGGGTAGAAGGAAGAAGGATAATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG