Sequence
atgc intronic sequence ATGC exonic sequence...ctgaaagacgatcacaaaaaagacctgaacccgactgagctttcattgattttcaagggcatgaggtatgtgggtcatcgtgaatcatgtttttcttcagTGGGTATGGATTATTTTCGAAGTGTTTTATGATCTTCTTGCTCTTATCATGGGTTACTTTGGAAACTTGA
Basic information
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgattttcaagggcatgaggtatgtgggtcatcgtgaatcatgtttttcttcagTGGGTATGGATTATTTTCGAAGTGTTTTATGATCTTCTTGCTCTTATCATGGGTTACTTTGGAAACTTGA
cattgat putative branch site (score: 4)
tcatgtttttcttc putative PPT
atgttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ctgaaagacgatcacaaaaaagacctgaacccgactgagctttcattgattttcaagggcatgaggtatgtgggtcatcgtgaatcatgtttttcttcagTGGGTATGGATTATTTTCGAAGTGTTTTATGATCTTCTTGCTCTTATCATGGGTTACTTTGGAAACTTGA
- gaaagac
- - - - - - - -aaaaaag
- - - - - - - - - - - - -tgaaccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcatgag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtatgtg