1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...aacacattaattggtctgtggtcaatataaagaaaatcaattcttgttatttcataattgtttctatttacagatttgcaaatattttcccattatatagGTATCTGCTGGAAAAGGAAATTCTGATAAGGAAGTAGTAATGGTAGATCCTTTGGAGGCGAAGCGTTTAGCTGCCAAACAGATGCAAGAATTTAAAGCAA
species | Vitis vinifera |
transcript | Vv11s0065g00850.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTGCCCATAGCACGAGGGGTCAAGCATTTCAAATCTTGGCCAATCCTAAT GTATCTGCTGGAAAAGGAAATTCTGATAAGGAAGTAGTAATGGTAGATCCTEST: gi|26265977|gb|CA817040.1|CA817040
genomic: CTGCCCATAGCACGAGGGGTCAAGCATTTCAAATCTTGGCCAATCCTAATgtatgaatca ... cattatatagGTATCTGCTGGAAAAGGAAATTCTGATAAGGAAGTAGTAATGGTAGATCCT
EST: CTGCCCATAGCACGAGGGGTCAAGCATTTCAAATCTTGGCCAATCCTAAT GTATCTGCTGGAAAAGGAAATTCTGATAAGGAAGTAGTAATGGTAGATCCTEST: gi|26263991|gb|CA815054.1|CA815054
genomic: CTGCCCATAGCACGAGGGGTCAAGCATTTCAAATCTTGGCCAATCCTAATgtatgaatca ... cattatatagGTATCTGCTGGAAAAGGAAATTCTGATAAGGAAGTAGTAATGGTAGATCCT
EST: CTGCCCATAGCACGAGGGGTCAAGCATTTCAAATCTTGGCCAATCCTAAT GTATCTGCTGGAAAAGGAAATTCTGATAAGGAAGTAGTAATGGTAGATCCTEST: gi|110360710|gb|EC924031.1|EC924031
genomic: CTGCCCATAGCACGAGGGGTCAAGCATTTCAAATCTTGGCCAATCCTAATgtatgaatca ... cattatatagGTATCTGCTGGAAAAGGAAATTCTGATAAGGAAGTAGTAATGGTAGATCCT
EST: CTGCCCATAGCACGAGGGGTCAAGCATTTCAAATCTTGGCCAATCCTAAT GTATCTGCTGGAAAAGGAAATTCTGATAAGGAAGTAGTAATGGTAGATCCT
genomic: CTGCCCATAGCACGAGGGGTCAAGCATTTCAAATCTTGGCCAATCCTAATgtatgaatca ... cattatatagGTATCTGCTGGAAAAGGAAATTCTGATAAGGAAGTAGTAATGGTAGATCCT
gttatttcataattgtttctatttacagatttgcaaatattttcccattatatagGTATCTGCTGGAAAAGGAAATTCTGATAAGGAAGTAGTAATGGTAGATCCTTTGGAGGCGAAGCGTTTAGCTGCCAAACAGATGCAAGAATTTAAAGCAA
ttttcccatt CT-rich tract
ataattgtttctattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aacacattaattggtctgtggtcaatataaagaaaatcaattcttgttatttcataattgtttctatttacagatttgcaaatattttcccattatatagGTATCTGCTGGAAAAGGAAATTCTGATAAGGAAGTAGTAATGGTAGATCCTTTGGAGGCGAAGCGTTTAGCTGCCAAACAGATGCAAGAATTTAAAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
aacacat
- - - - - - - - - - - - - - -aagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaatat