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...attatttggctgtatagcgaatgcatgcatacacacatatgccttttgttttttattttcgttgttgcatggttgctatctcacaaatgtttatggacagGAAATTATGCTCGAGTTTCGTGCAGGTAAAATGGTTTTTGAGGGAACAAGAGTCACCCCAGATGCACGTAAAGGACTTGTTCGTATTGCAAAG
species | Vitis vinifera |
transcript | Vv11s0065g00450.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCAGCAAAGTCATGGGTTCGTCATCAGCTGACACTTTTCCAGTCATGCAG GAAATTATGATCGAGTTTCGTGCAGGTAAAATGGTTTTTGAGGGAACAAGAEST: gi|294964296|gb|GW838099.1|GW838099
genomic: GCAGCAAAGTCATGGGTTCGTCATCAGCTGACACTTTTCCAGTCATGCAGgtatgattag ... ttatggacagGAAATTATGCTCGAGTTTCGTGCAGGTAAAATGGTTTTTGAGGGAACAAGA
EST: GCAGCAAAGTCATGGGTTCGTCATCAGCTGACACTTTTCCAGTCATGCAG GAAATTATGCTCGAGTTTCGTGCAGGTAAAATGGTTTTTGAGGGAACAAGAEST: gi|351028718|gb|FQ433148.1|FQ433148
genomic: GCAGCAAAGTCATGGGTTCGTCATCAGCTGACACTTTTCCAGTCATGCAGgtatgattag ... ttatggacagGAAATTATGCTCGAGTTTCGTGCAGGTAAAATGGTTTTTGAGGGAACAAGA
EST: GCAGCAAAGTCATGGGATCGTCATCAGCTGACACTTTTCCAGTCATGCAG GAAATTATGCTCGAGTTTCGTGCAGGTAAAATGGTTTTTGAGGGAACAAGAEST: gi|22011495|gb|BQ796529.1|BQ796529
genomic: GCAGCAAAGTCATGGGTTCGTCATCAGCTGACACTTTTCCAGTCATGCAGgtatgattag ... ttatggacagGAAATTATGCTCGAGTTTCGTGCAGGTAAAATGGTTTTTGAGGGAACAAGA
EST: GCAGCAAAGTCATGGGTTCGTCATCAGCTGACACTTTTCCAGTCATGCAG GAAATTATGCTCGAGTTTCGTGCAGGTAAAATGGTTTTTGAGGGAACAAGAEST: gi|161716363|gb|FC068095.1|FC068095
genomic: GCAGCAAAGTCATGGGTTCGTCATCAGCTGACACTTTTCCAGTCATGCAGgtatgattag ... ttatggacagGAAATTATGCTCGAGTTTCGTGCAGGTAAAATGGTTTTTGAGGGAACAAGA
EST: GCAGCAAAGTCATGGGTTCGTCATCAGCTGACACTTTTCCAGTCATGCAG GAAATTATGATCGAGTTTCGTGCAGGTAAAATGGTTTTTGAGGGAACAAGA
genomic: GCAGCAAAGTCATGGGTTCGTCATCAGCTGACACTTTTCCAGTCATGCAGgtatgattag ... ttatggacagGAAATTATGCTCGAGTTTCGTGCAGGTAAAATGGTTTTTGAGGGAACAAGA
ttgttttttattttcgttgttgcatggttgctatctcacaaatgtttatggacagGAAATTATGCTCGAGTTTCGTGCAGGTAAAATGGTTTTTGAGGGAACAAGAGTCACCCCAGATGCACGTAAAGGACTTGTTCGTATTGCAAAG
atctcac putative branch site (score: 3)
ttttatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attatttggctgtatagcgaatgcatgcatacacacatatgccttttgttttttattttcgttgttgcatggttgctatctcacaaatgtttatggacagGAAATTATGCTCGAGTTTCGTGCAGGTAAAATGGTTTTTGAGGGAACAAGAGTCACCCCAGATGCACGTAAAGGACTTGTTCGTATTGCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - tggctgt
- - - - - - - - - - - gcatgca
- - - - - - - - - - - - - - - acacaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcatggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacaaat